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Scoc Gene Detail
Summary
  • Symbol
    Scoc
  • Name
    short coiled-coil protein
  • Synonyms
    0610011C06Rik, 2810002J11Rik, short coiled-coil protein
  • Feature Type
    protein coding gene
  • IDs
    MGI:1927654
    NCBI Gene: 56367
  • Alliance
    gene page
  • Transcription Start Sites
    11 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:84161121-84185055 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 40.22 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    871 from dbSNP Build 142
  • Strain Annotations
    11
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1927654
 protein coding gene Chr8:84156713-84185055 (-)
129S1/SvImJ MGP_129S1SvImJ_G0027911
 protein coding gene Chr3:138895708-138899852 (-)
A/J no annotation
AKR/J MGP_AKRJ_G0027834
 protein coding gene Chr3:137562292-137566606 (-)
BALB/cJ no annotation
C3H/HeJ MGP_C3HHeJ_G0033517
 protein coding gene Chr8:83977475-83987592 (-)
C57BL/6NJ no annotation
CAROLI/EiJ MGP_CAROLIEiJ_G0031269
 protein coding gene Chr8:74790517-74798664 (-)
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0027587
 protein coding gene Chr3:148584711-148588565 (-)
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0033594
 protein coding gene Chr8:79521634-79528876 (-)
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0027725
 protein coding gene Chr3:156702664-156705958 (-)
NZO/HlLtJ no annotation
PWK/PhJ MGP_PWKPhJ_G0032551
 protein coding gene Chr8:79821005-79829333 (-)
SPRET/EiJ MGP_SPRETEiJ_G0026617
 protein coding gene Chr3:135167159-135169283 (-)
WSB/EiJ MGP_WSBEiJ_G0027146
 protein coding gene Chr3:137893548-137896732 (-)



Homology
more
  • Human Ortholog
    SCOC, short coiled-coil protein
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SCOC, short coiled-coil protein
  • Synonyms
    HRIHFB2072, SCOCO, UNC-69
  • Links
    NCBI Gene ID: 60592
    neXtProt AC: NX_Q9UIL1
    UniProt: Q9UIL1

  • Chr Location
    4q31.1; chr4:140257286-140385728 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 1 allele in 1 genetic background
    40 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    10
  • GO References
    4
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    776
  • Tissues
    8
  • cDNA Data
    100
  • Literature Summary
    1
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 56367 NCBI Gene Model | MGI Sequence Detail 23935 C57BL/6J ±  kb
    transcript NM_019708 RefSeq | MGI Sequence Detail 1946 C57BL/6  
    polypeptide Q78YZ6 UniProt | EBI | MGI Sequence Detail 125 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 101
      cDNA 101

      Microarray probesets 6
    Other
    Accession IDs
    less
    MGI:1914876, MGI:1923509, MGI:2142423
    References
    more
    • Summaries
      All 67
      Developmental Gene Expression 1
      Gene Ontology 4
      Phenotypes 40
    • Earliest
      J:13049 Gruneberg H, Genetical studies on the skeleton of the mouse. XVIII. Three genes for syndactylism. J Genet. 1956;54(1):113-145
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    10/22/2024
    MGI 6.24     		The Jackson Laboratory