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Rps6ka6 Gene Detail
Summary
  • Symbol
    Rps6ka6
  • Name
    ribosomal protein S6 kinase polypeptide 6
  • Synonyms
    2610524K04Rik, RSK4
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914321
    NCBI Gene: 67071
  • Alliance
    gene page
  • Transcription Start Sites
    12 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:110297889-110447656 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 48.20 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2320 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914321
 protein coding gene ChrX:110297534-110447794 (-)
129S1/SvImJ MGP_129S1SvImJ_G0036027
 protein coding gene ChrX:108101422-108264282 (-)
A/J MGP_AJ_G0036007
 protein coding gene ChrX:108000770-108151181 (-)
AKR/J MGP_AKRJ_G0035926
 protein coding gene ChrX:111341969-111495811 (-)
BALB/cJ MGP_BALBcJ_G0035998
 protein coding gene ChrX:106620949-106783957 (-)
C3H/HeJ MGP_C3HHeJ_G0035704
 protein coding gene ChrX:108565665-108718011 (-)
C57BL/6NJ MGP_C57BL6NJ_G0036523
 protein coding gene ChrX:111250235-111437376 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0033350
 protein coding gene ChrX:104793326-104940481 (-)
CAST/EiJ MGP_CASTEiJ_G0034990
 protein coding gene ChrX:92485764-92644975 (-)
CBA/J MGP_CBAJ_G0035680
 protein coding gene ChrX:114744836-114943209 (-)
DBA/2J MGP_DBA2J_G0035833
 protein coding gene ChrX:107136619-107288992 (-)
FVB/NJ MGP_FVBNJ_G0035774
 protein coding gene ChrX:106522229-106671128 (-)
LP/J MGP_LPJ_G0035926
 protein coding gene ChrX:109001903-109153942 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0035805
 protein coding gene ChrX:120137383-120290446 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0036550
 protein coding gene ChrX:107653280-107813632 (-)
PWK/PhJ MGP_PWKPhJ_G0034685
 protein coding gene ChrX:90006927-90158133 (-)
SPRET/EiJ MGP_SPRETEiJ_G0034515
 protein coding gene ChrX:93341024-93489327 (-)
WSB/EiJ MGP_WSBEiJ_G0035128
 protein coding gene ChrX:106475676-106628294 (-)



Homology
more
  • Human Ortholog
    RPS6KA6, ribosomal protein S6 kinase A6
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RPS6KA6, ribosomal protein S6 kinase A6
  • Synonyms
    p90RSK6, PP90RSK4, RSK-4, RSK4, S6K-alpha-6
  • Links
    NCBI Gene ID: 27330
    neXtProt AC: NX_Q9UK32
    UniProt: Q9UK32

  • Chr Location
    Xq21.1; chrX:84058346-84206356 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotypes from 1 allele in 1 genetic background
    23 images
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Male chimeras hemizygous for a gene trapped allele exhibit a possible gastrulation defect, primitive streak and node defects, failure of chorioallantoic fusion, impaired embryo turning, posterior truncation, abnormal heart development, and microcephaly.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    42
  • GO References
    11
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    831
  • Tissues
    49
  • cDNA Data
    110
  • Literature Summary
    8
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000025665 Ensembl Gene Model | MGI Sequence Detail 149768 C57BL/6J ±  kb
    transcript ENSMUST00000123951 Ensembl | MGI Sequence Detail 4328 Not Applicable  
    polypeptide ENSMUSP00000115975 Ensembl | MGI Sequence Detail 860 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 112
      cDNA 110
      Primer pair 2

      Microarray probesets 5
    References
    more
    • Summaries
      All 46
      Developmental Gene Expression 8
      Gene Ontology 11
      Phenotypes 11
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:349696 Lekkos K, et al., Validation of positional candidates Rps6ka6 and Pou3f4 for a locus associated with skeletal muscle mass variability. G3 (Bethesda). 2024 May 7;14(5)
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/19/2024
    MGI 6.24     		The Jackson Laboratory