About   Help   FAQ
Slc39a9 Gene Detail
Summary
  • Symbol
    Slc39a9
  • Name
    solute carrier family 39 (zinc transporter), member 9
  • Synonyms
    2010002A02Rik, 2610511I23Rik, 4833420E20Rik, Zip9
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914820
    NCBI Gene: 328133
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:80690657-80730116 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 12, 36.91 cM, cytoband D2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    824 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914820
 protein coding gene Chr12:80690657-80730116 (+)
129S1/SvImJ MGP_129S1SvImJ_G0019891
 protein coding gene Chr12:81026125-81074078 (+)
A/J MGP_AJ_G0019849
 protein coding gene Chr12:78084357-78124844 (+)
AKR/J MGP_AKRJ_G0019824
 protein coding gene Chr12:80218711-80258951 (+)
BALB/cJ MGP_BALBcJ_G0019828
 protein coding gene Chr12:78337627-78377960 (+)
C3H/HeJ MGP_C3HHeJ_G0019634
 protein coding gene Chr12:80689540-80730668 (+)
C57BL/6NJ MGP_C57BL6NJ_G0020280
 protein coding gene Chr12:83395340-83438337 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0017899
 protein coding gene Chr12:75078724-75118469 (+)
CAST/EiJ MGP_CASTEiJ_G0019184
 protein coding gene Chr12:75544790-75584928 (+)
CBA/J MGP_CBAJ_G0019605
 protein coding gene Chr12:86660895-86700225 (+)
DBA/2J MGP_DBA2J_G0019720
 protein coding gene Chr12:77696643-77736506 (+)
FVB/NJ MGP_FVBNJ_G0019706
 protein coding gene Chr12:76519167-76557982 (+)
LP/J MGP_LPJ_G0019792
 protein coding gene Chr12:80954095-80996727 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0019745
 protein coding gene Chr12:89663781-89704339 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0020315
 protein coding gene Chr12:79744971-79785431 (+)
PWK/PhJ MGP_PWKPhJ_G0018950
 protein coding gene Chr12:72087339-72127521 (+)
SPRET/EiJ MGP_SPRETEiJ_G0018744
 protein coding gene Chr12:74257822-74299367 (+)
WSB/EiJ MGP_WSBEiJ_G0019237
 protein coding gene Chr12:80387652-80428700 (+)



Homology
more
  • Human Ortholog
    SLC39A9, solute carrier family 39 member 9
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SLC39A9, solute carrier family 39 member 9
  • Synonyms
    ZIP-9, ZIP9
  • Links
    NCBI Gene ID: 55334
    neXtProt AC: NX_Q9NUM3
    UniProt: Q9NUM3

  • Chr Location
    14q24.1; chr14:69398015-69462390 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    12 phenotype references
  • All Mutations and Alleles
    12
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    3
  • Gene trapped
    5
  • Targeted
    3
  • Genomic Mutations
    1 involving Slc39a9
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
    17 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    35
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    707
  • Tissues
    1
  • cDNA Data
    14
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 328133 NCBI Gene Model | MGI Sequence Detail 39460 C57BL/6J ±  kb
transcript NM_026244 RefSeq | MGI Sequence Detail 5247 C57BL/6  
polypeptide Q8BFU1 UniProt | EBI | MGI Sequence Detail 308 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 15
    cDNA 14
    Primer pair 1

    Microarray probesets 5
Other
Accession IDs
less
MGI:1917080, MGI:1917287, MGI:2145015
References
more
  • Summaries
    All 40
    Developmental Gene Expression 2
    Gene Ontology 5
    Phenotypes 12
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:345559 Song L, et al., ZIP9 mediates the effects of DHT on learning, memory and hippocampal synaptic plasticity of male Tfm and APP/PS1 mice. Front Endocrinol (Lausanne). 2023;14:1139874
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory