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Synpr Gene Detail
Summary
  • Symbol
    Synpr
  • Name
    synaptoporin
  • Synonyms
    1500003F20Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919253
    NCBI Gene: 72003
  • Alliance
    gene page
  • Transcription Start Sites
    9 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:8854294-9184983 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 6.86 cM, cytoband A2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    10686 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919253
 protein coding gene Chr14:8853423-9184983 (-)
129S1/SvImJ MGP_129S1SvImJ_G0021001
 protein coding gene Chr14:5754311-6109085 (+)
A/J MGP_AJ_G0020949
 protein coding gene Chr14:5624680-5961892 (+)
AKR/J MGP_AKRJ_G0020926
 protein coding gene Chr14:5726614-6062036 (+)
BALB/cJ MGP_BALBcJ_G0020952
 protein coding gene Chr14:5631484-5970879 (+)
C3H/HeJ MGP_C3HHeJ_G0020736
 protein coding gene Chr14:5811504-6160240 (+)
C57BL/6NJ MGP_C57BL6NJ_G0021385
 protein coding gene Chr14:5941261-6273507 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0018954
 protein coding gene Chr14:6320974-6644105 (+)
CAST/EiJ MGP_CASTEiJ_G0020258
 protein coding gene Chr14:5762286-6161198 (+)
CBA/J MGP_CBAJ_G0020702
 protein coding gene Chr14:6153215-6506952 (+)
DBA/2J MGP_DBA2J_G0020825
 protein coding gene Chr14:5567883-5902771 (+)
FVB/NJ MGP_FVBNJ_G0020807
 protein coding gene Chr14:5514827-5836757 (+)
LP/J MGP_LPJ_G0020901
 protein coding gene Chr14:5763628-6107656 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0020833
 protein coding gene Chr14:6198668-6563322 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0021418
 protein coding gene Chr14:5691427-6026877 (+)
PWK/PhJ MGP_PWKPhJ_G0020010
 protein coding gene Chr14:5575519-5904871 (+)
SPRET/EiJ MGP_SPRETEiJ_G0019830
 protein coding gene Chr14:5784661-6132167 (+)
WSB/EiJ MGP_WSBEiJ_G0020316
 protein coding gene Chr14:5726385-6071975 (+)



Homology
more
  • Human Ortholog
    SYNPR, synaptoporin
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from multigenic genotypes
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    6
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    1045
  • Tissues
    39
  • cDNA Data
    21
  • Literature Summary
    13
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 72003 NCBI Gene Model | MGI Sequence Detail 330690 C57BL/6J ±  kb
transcript NM_001163032 RefSeq | MGI Sequence Detail 2657 C57BL/6  
polypeptide Q8BGN8 UniProt | EBI | MGI Sequence Detail 265 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 22
    cDNA 21
    Primer pair 1

    Microarray probesets 4
References
more
  • Summaries
    All 39
    Developmental Gene Expression 13
    Gene Ontology 4
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:326542 van de Haar LL, et al., Molecular signatures and cellular diversity during mouse habenula development. Cell Rep. 2022 Jul 5;40(1):111029
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory