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Lhfpl6 Gene Detail
Summary
  • Symbol
    Lhfpl6
  • Name
    LHFPL tetraspan subfamily member 6
  • Synonyms
    2810489O06Rik, Lhfp
  • Feature Type
    protein coding gene
  • IDs
    MGI:1920048
    NCBI Gene: 108927
  • Alliance
    gene page
  • Transcription Start Sites
    10 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:52948968-53169100 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 24.17 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    6378 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1920048
 protein coding gene Chr3:52948949-53169100 (+)
129S1/SvImJ MGP_129S1SvImJ_G0027204
 protein coding gene Chr3:51620525-51849220 (+)
A/J MGP_AJ_G0027164
 protein coding gene Chr3:50072311-50288480 (+)
AKR/J MGP_AKRJ_G0027133
 protein coding gene Chr3:51081881-51300854 (+)
BALB/cJ MGP_BALBcJ_G0027176
 protein coding gene Chr3:49944144-50157000 (+)
C3H/HeJ MGP_C3HHeJ_G0026919
 protein coding gene Chr3:51317664-51534174 (+)
C57BL/6NJ MGP_C57BL6NJ_G0027622
 protein coding gene Chr3:53618557-53859258 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024982
 protein coding gene Chr3:46670196-46869419 (+)
CAST/EiJ MGP_CASTEiJ_G0026372
 protein coding gene Chr3:51399680-51610697 (+)
CBA/J MGP_CBAJ_G0026896
 protein coding gene Chr3:55328299-55559816 (+)
DBA/2J MGP_DBA2J_G0027030
 protein coding gene Chr3:49657380-49868894 (+)
FVB/NJ MGP_FVBNJ_G0026998
 protein coding gene Chr3:48641253-48846800 (+)
LP/J MGP_LPJ_G0027142
 protein coding gene Chr3:52359305-52577277 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0027016
 protein coding gene Chr3:59463133-59686694 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0027681
 protein coding gene Chr3:50993488-51211942 (+)
PWK/PhJ MGP_PWKPhJ_G0026104
 protein coding gene Chr3:49321140-49525664 (+)
SPRET/EiJ MGP_SPRETEiJ_G0025917
 protein coding gene Chr3:50714435-50925087 (+)
WSB/EiJ MGP_WSBEiJ_G0026446
 protein coding gene Chr3:51108843-51323942 (+)



Homology
more
  • Human Ortholog
    LHFPL6, LHFPL tetraspan subfamily member 6
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    LHFPL6, LHFPL tetraspan subfamily member 6
  • Synonyms
    LHFP
  • Links
    NCBI Gene ID: 10186
    neXtProt AC: NX_Q9Y693
    UniProt: Q9Y693

  • Chr Location
    13q13.3-q14.11; chr13:39209116-39603528 (-)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotypes from 1 allele in 1 genetic background
    16 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    2
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    933
  • Tissues
    34
  • cDNA Data
    41
  • Literature Summary
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 108927 NCBI Gene Model | MGI Sequence Detail 220133 C57BL/6J ±  kb
    transcript NM_175386 RefSeq | MGI Sequence Detail 2107 C57BL/6  
    polypeptide Q8BM86 UniProt | EBI | MGI Sequence Detail 200 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 42
      cDNA 41
      Primer pair 1

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:2139644, MGI:7414065
    References
    more
    • Summaries
      All 42
      Developmental Gene Expression 2
      Diseases 1
      Gene Ontology 2
      Phenotypes 16
    • Earliest
      J:64276 Lyon MF, et al., Dose-response curves for radiation-induced gene mutations in mouse oocytes and their interpretation. Mutat Res. 1979 Nov;63(1):161-73
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/05/2024
    MGI 6.24     		The Jackson Laboratory