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Trmt13 Gene Detail
Summary
  • Symbol
    Trmt13
  • Name
    tRNA methyltransferase 13
  • Synonyms
    4631408H19Rik, A930028L21Rik, Ccdc76
  • Feature Type
    protein coding gene
  • IDs
    MGI:1925219
    NCBI Gene: 229780
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:116374742-116408236 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 50.40 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    1254 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1925219
 protein coding gene Chr3:116365706-116408236 (-)
129S1/SvImJ MGP_129S1SvImJ_G0027813
 protein coding gene Chr3:118484439-118523618 (-)
A/J MGP_AJ_G0027771
 protein coding gene Chr3:114608732-114643381 (-)
AKR/J MGP_AKRJ_G0027737
 protein coding gene Chr3:117515441-117548489 (-)
BALB/cJ MGP_BALBcJ_G0027783
 protein coding gene Chr3:114451315-114485584 (-)
C3H/HeJ MGP_C3HHeJ_G0027514
 protein coding gene Chr3:117874826-117908091 (-)
C57BL/6NJ MGP_C57BL6NJ_G0028229
 protein coding gene Chr3:122833943-122870565 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025568
 protein coding gene Chr3:110299756-110332757 (-)
CAST/EiJ MGP_CASTEiJ_G0026970
 protein coding gene Chr3:117159760-117192536 (-)
CBA/J MGP_CBAJ_G0027489
 protein coding gene Chr3:127028404-127061966 (-)
DBA/2J MGP_DBA2J_G0027630
 protein coding gene Chr3:113838669-113879545 (-)
FVB/NJ MGP_FVBNJ_G0027598
 protein coding gene Chr3:111482747-111516342 (-)
LP/J MGP_LPJ_G0027740
 protein coding gene Chr3:120027762-120066440 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027628
 protein coding gene Chr3:134412288-134448487 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028285
 protein coding gene Chr3:117041772-117080370 (-)
PWK/PhJ MGP_PWKPhJ_G0026696
 protein coding gene Chr3:113490707-113526201 (-)
SPRET/EiJ MGP_SPRETEiJ_G0026518
 protein coding gene Chr3:115061275-115095621 (-)
WSB/EiJ MGP_WSBEiJ_G0027050
 protein coding gene Chr3:117732104-117768167 (-)



Homology
more
  • Human Ortholog
    TRMT13, tRNA methyltransferase 13 homolog
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRMT13, tRNA methyltransferase 13 homolog
  • Synonyms
    CCDC76
  • Links
    NCBI Gene ID: 54482
    neXtProt AC: NX_Q9NUP7
    UniProt: Q9NUP7

  • Chr Location
    1p21.2; chr1:100133150-100150496 (+)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
  • All Mutations and Alleles
    16
  • Chemically induced (other)
    1
  • Gene trapped
    12
  • Radiation induced
    1
  • Targeted
    2
  • Genomic Mutations
    2 involving Trmt13
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
    28 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    5
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    11
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000033439 Ensembl Gene Model | MGI Sequence Detail 33495 C57BL/6J ±  kb
transcript ENSMUST00000041524 Ensembl | MGI Sequence Detail 3402 Not Applicable  
polypeptide ENSMUSP00000047320 Ensembl | MGI Sequence Detail 481 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 11
    cDNA 11

    Microarray probesets 5
Other
Accession IDs
less
MGI:1918051
References
more
  • Summaries
    All 32
    Diseases 1
    Gene Ontology 3
    Phenotypes 9
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory