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Slc9a9 Gene Detail
Summary
  • Symbol
    Slc9a9
  • Name
    solute carrier family 9 (sodium/hydrogen exchanger), member 9
  • Synonyms
    5730527A11Rik, Nhe9
  • Feature Type
    protein coding gene
  • IDs
    MGI:2679732
    NCBI Gene: 331004
  • Alliance
    gene page
  • Transcription Start Sites
    20 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:94551962-95112498 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 49.22 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    16381 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2679732
 protein coding gene Chr9:94551945-95112505 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035132
 protein coding gene Chr9:95794704-96361154 (+)
A/J MGP_AJ_G0035113
 protein coding gene Chr9:92446464-93006768 (+)
AKR/J MGP_AKRJ_G0035045
 protein coding gene Chr9:94651593-95235882 (+)
BALB/cJ MGP_BALBcJ_G0035106
 protein coding gene Chr9:92128246-92683346 (+)
C3H/HeJ MGP_C3HHeJ_G0034816
 protein coding gene Chr9:95105283-95682549 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035626
 protein coding gene Chr9:98521274-99102387 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032528
 protein coding gene Chr9:90744682-90747471 (+)
CAST/EiJ MGP_CASTEiJ_G0034128
 protein coding gene Chr9:94837908-95409927 (+)
CBA/J MGP_CBAJ_G0034784
 protein coding gene Chr9:101917468-102518414 (+)
DBA/2J MGP_DBA2J_G0034946
 protein coding gene Chr9:91956592-92525895 (+)
FVB/NJ MGP_FVBNJ_G0034894
 protein coding gene Chr9:90844384-91388134 (+)
LP/J MGP_LPJ_G0035025
 protein coding gene Chr9:96016543-96589314 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0034933
 protein coding gene Chr9:103960726-104553307 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035648
 protein coding gene Chr9:94891560-95469006 (+)
PWK/PhJ MGP_PWKPhJ_G0033835
 protein coding gene Chr9:92116957-92678249 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033670
 protein coding gene Chr9:94869214-95468792 (+)
WSB/EiJ MGP_WSBEiJ_G0034248
 protein coding gene Chr9:94763511-95338395 (+)



Homology
more
  • Human Ortholog
    SLC9A9, solute carrier family 9 member A9
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SLC9A9, solute carrier family 9 member A9
  • Synonyms
    AUTS16, NHE9
  • Links
    NCBI Gene ID: 285195
    neXtProt AC: NX_Q8IVB4
    UniProt: Q8IVB4

  • Chr Location
    3q24
Human Diseases
more
  • Diseases
    1 with Slc9a9 mouse models; 1 with human SLC9A9 associations

Human Disease Mouse Models
      
IDs
 View 3 models
      
IDs
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    3 with disease annotations
  • References
    2 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    28 phenotypes from 4 alleles in 3 genetic backgrounds
    12 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a null allele display abnormal social and olfactory behavior, abnormal CNS synaptic transmission, impaired synaptic vesicle exocytosis, impaired presynaptic calcium entry, and decreased synaptic vescile pH.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    25
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    875
  • Tissues
    135
  • cDNA Data
    29
  • Literature Summary
    8
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000031129 Ensembl Gene Model | MGI Sequence Detail 560537 C57BL/6J ±  kb
    transcript ENSMUST00000033463 Ensembl | MGI Sequence Detail 3468 Not Applicable  
    polypeptide ENSMUSP00000033463 Ensembl | MGI Sequence Detail 644 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 31
      cDNA 29
      Primer pair 1
      Other 1

      Microarray probesets 6
    Other
    Accession IDs
    less
    MGI:1917898, MGI:2143161
    References
    more
    • Summaries
      All 47
      Developmental Gene Expression 8
      Diseases 2
      Gene Ontology 6
      Phenotypes 12
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/19/2024
    MGI 6.24     		The Jackson Laboratory