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Slc66a1 Gene Detail
Summary
  • Symbol
    Slc66a1
  • Name
    solute carrier family 66 member 1
  • Synonyms
    MGC:29170, MGC:38094, Pqlc2
  • Feature Type
    protein coding gene
  • IDs
    MGI:2384837
    NCBI Gene: 212555
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:139021340-139038019 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 70.63 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    645 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2384837
 protein coding gene Chr4:139021340-139038025 (-)
129S1/SvImJ MGP_129S1SvImJ_G0029014
 protein coding gene Chr4:142119186-142136887 (-)
A/J MGP_AJ_G0028973
 protein coding gene Chr4:136008532-136026103 (-)
AKR/J MGP_AKRJ_G0028925
 protein coding gene Chr4:139906175-139922697 (-)
BALB/cJ MGP_BALBcJ_G0028997
 protein coding gene Chr4:136686161-136702938 (-)
C3H/HeJ MGP_C3HHeJ_G0028711
 protein coding gene Chr4:140285573-140302279 (-)
C57BL/6NJ MGP_C57BL6NJ_G0029438
 protein coding gene Chr4:147148659-147174575 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0026709
 protein coding gene Chr4:128982553-128999670 (-)
CAST/EiJ MGP_CASTEiJ_G0028143
 protein coding gene Chr4:138460300-138481108 (-)
CBA/J MGP_CBAJ_G0028675
 protein coding gene Chr4:151398198-151418138 (-)
DBA/2J MGP_DBA2J_G0028825
 protein coding gene Chr4:136407589-136425363 (-)
FVB/NJ MGP_FVBNJ_G0028792
 protein coding gene Chr4:135430336-135445723 (-)
LP/J MGP_LPJ_G0028924
 protein coding gene Chr4:142193130-142211047 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0028818
 protein coding gene Chr4:155289231-155319144 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0029476
 protein coding gene Chr4:140432280-140450122 (-)
PWK/PhJ MGP_PWKPhJ_G0027864
 protein coding gene Chr4:133256489-133273496 (-)
SPRET/EiJ MGP_SPRETEiJ_G0027689
 protein coding gene Chr4:136203427-136223994 (-)
WSB/EiJ MGP_WSBEiJ_G0028221
 protein coding gene Chr4:140686254-140702918 (-)



Homology
more
  • Human Ortholog
    SLC66A1, solute carrier family 66 member 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SLC66A1, solute carrier family 66 member 1
  • Synonyms
    LAAT-1, LAAT1, PQLC2
  • Links
    NCBI Gene ID: 54896
    neXtProt AC: NX_Q6ZP29
    UniProt: Q6ZP29

  • Chr Location
    1p36.13; chr1:19312326-19334463 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    12 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    26
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    709
  • Tissues
    3
  • cDNA Data
    23
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000028744 Ensembl Gene Model | MGI Sequence Detail 16680 C57BL/6J ±  kb
transcript ENSMUST00000105801 Ensembl | MGI Sequence Detail 2756 Not Applicable  
polypeptide ENSMUSP00000101427 Ensembl | MGI Sequence Detail 350 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 24
    cDNA 23
    Other 1

    Microarray probesets 3
Other
Accession IDs
less
MGI:6393869
References
more
  • Summaries
    All 38
    Developmental Gene Expression 1
    Gene Ontology 5
    Phenotypes 12
  • Earliest
    J:82808 Strausberg RL, et al., Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903
  • Latest
    J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory