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Clmn Gene Detail
Summary
  • Symbol
    Clmn
  • Name
    calmin
  • Synonyms
    9330188N17Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2136957
    NCBI Gene: 94040
  • Alliance
    gene page
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:104729376-104831335 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 12, 54.91 cM, cytoband F1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    3350 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2136957
 protein coding gene Chr12:104729373-104831335 (-)
129S1/SvImJ MGP_129S1SvImJ_G0020080
 protein coding gene Chr12:106572250-106689749 (-)
A/J MGP_AJ_G0020034
 protein coding gene Chr12:102531726-102635298 (-)
AKR/J MGP_AKRJ_G0020011
 protein coding gene Chr12:105487907-105591563 (-)
BALB/cJ MGP_BALBcJ_G0020020
 protein coding gene Chr12:102938093-103041528 (-)
C3H/HeJ MGP_C3HHeJ_G0019823
 protein coding gene Chr12:105947525-106057071 (-)
C57BL/6NJ MGP_C57BL6NJ_G0020466
 protein coding gene Chr12:109885481-109987536 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0018079
 protein coding gene Chr12:99239450-99347288 (-)
CAST/EiJ MGP_CASTEiJ_G0019364
 protein coding gene Chr12:100786215-100896860 (-)
CBA/J MGP_CBAJ_G0019790
 protein coding gene Chr12:114116220-114228899 (-)
DBA/2J MGP_DBA2J_G0019907
 protein coding gene Chr12:102078511-102182638 (-)
FVB/NJ MGP_FVBNJ_G0019892
 protein coding gene Chr12:100861359-100965523 (-)
LP/J MGP_LPJ_G0019982
 protein coding gene Chr12:106445024-106558466 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0019930
 protein coding gene Chr12:117574703-117683632 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0020495
 protein coding gene Chr12:104913058-105017985 (-)
PWK/PhJ MGP_PWKPhJ_G0019127
 protein coding gene Chr12:96584702-96691427 (-)
SPRET/EiJ MGP_SPRETEiJ_G0018929
 protein coding gene Chr12:99179507-99287052 (-)
WSB/EiJ MGP_WSBEiJ_G0019423
 protein coding gene Chr12:105889616-105999162 (-)



Homology
more
  • Human Ortholog
    CLMN, calmin
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CLMN, calmin
  • Links
    NCBI Gene ID: 79789
    neXtProt AC: NX_Q96JQ2
    UniProt: Q96JQ2

  • Chr Location
    14q32.13; chr14:95181940-95319908 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    13 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    11
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    1016
  • Tissues
    65
  • cDNA Data
    70
  • Literature Summary
    4
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000021097 Ensembl Gene Model | MGI Sequence Detail 101960 C57BL/6J ±  kb
transcript ENSMUST00000109937 Ensembl | MGI Sequence Detail 3529 Not Applicable  
polypeptide ENSMUSP00000105563 Ensembl | MGI Sequence Detail 1052 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 72
    cDNA 70
    Primer pair 2

    Microarray probesets 10
Other
Accession IDs
less
MGI:2144820, MGI:2144884
References
more
  • Summaries
    All 40
    Developmental Gene Expression 4
    Gene Ontology 4
    Phenotypes 13
  • Earliest
    J:69942 Ishisaki Z, et al., Calmin, a protein with calponin homology and transmembrane domains expressed in maturing spermatogenic cells. Genomics. 2001 Jun 1;74(2):172-9
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/22/2024
MGI 6.24 		The Jackson Laboratory