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Sltm Gene Detail
Summary
  • Symbol
    Sltm
  • Name
    SAFB-like, transcription modulator
  • Synonyms
    5730455C01Rik, 5730555F13Rik, 9130215G10Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913910
    NCBI Gene: 66660
  • Alliance
    gene page
  • Transcription Start Sites
    17 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:70450036-70499516 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 39.53 cM, cytoband D
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1001 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913910
 protein coding gene Chr9:70449717-70499519 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035001
 protein coding gene Chr9:70641162-70694570 (+)
A/J MGP_AJ_G0034982
 protein coding gene Chr9:68174343-68224337 (+)
AKR/J MGP_AKRJ_G0034911
 protein coding gene Chr9:69781387-69831975 (+)
BALB/cJ MGP_BALBcJ_G0034974
 protein coding gene Chr9:67887748-67938499 (+)
C3H/HeJ MGP_C3HHeJ_G0034683
 protein coding gene Chr9:70304861-70359186 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035493
 protein coding gene Chr9:72497965-72551258 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032404
 protein coding gene Chr9:67714538-67762587 (+)
CAST/EiJ MGP_CASTEiJ_G0034005
 protein coding gene Chr9:70579880-70632827 (+)
CBA/J MGP_CBAJ_G0034656
 protein coding gene Chr9:75024043-75081429 (+)
DBA/2J MGP_DBA2J_G0034815
 protein coding gene Chr9:67914795-67964256 (+)
FVB/NJ MGP_FVBNJ_G0034757
 protein coding gene Chr9:67238688-67288633 (+)
LP/J MGP_LPJ_G0034896
 protein coding gene Chr9:70868251-70924516 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0034798
 protein coding gene Chr9:76100971-76157350 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035515
 protein coding gene Chr9:69938652-69990239 (+)
PWK/PhJ MGP_PWKPhJ_G0033709
 protein coding gene Chr9:68153057-68203101 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033542
 protein coding gene Chr9:70239285-70290588 (+)
WSB/EiJ MGP_WSBEiJ_G0034117
 protein coding gene Chr9:69835207-69889908 (+)



Homology
more
  • Human Ortholog
    SLTM, SAFB like transcription modulator
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SLTM, SAFB like transcription modulator
  • Synonyms
    Met
  • Links
    NCBI Gene ID: 79811
    neXtProt AC: NX_Q9NWH9
    UniProt: Q9NWH9

  • Chr Location
    15q22.1; chr15:58879050-58933679 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    9
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    764
  • Tissues
    48
  • cDNA Data
    22
  • Literature Summary
    5
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000032212 Ensembl Gene Model | MGI Sequence Detail 49481 C57BL/6J ±  kb
transcript ENSMUST00000049263 Ensembl | MGI Sequence Detail 3691 Not Applicable  
polypeptide ENSMUSP00000049112 Ensembl | MGI Sequence Detail 1031 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    5 Sequences
  • Protein Ontology
    PR:000015249 SAFB-like transcription modulator
    (term hierarchy)
  • InterPro Domains
    IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
    IPR035979 RNA-binding domain superfamily
    IPR000504 RNA recognition motif domain
    IPR003034 SAP domain
    IPR036361 SAP domain superfamily
    IPR051738 Scaffold Attachment Factor and Modulators
  • GlyGen
    Q8CH25 3 sites, 2 N-linked glycans (2 sites), 1 O-linked glycan (1 site)
Molecular
Reagents
less
  • All nucleic 29
    cDNA 27
    Primer pair 2

    Microarray probesets 8
Other
Accession IDs
less
MGI:1914970, MGI:1924961
References
more
  • Summaries
    All 38
    Developmental Gene Expression 5
    Gene Ontology 4
    Phenotypes 9
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:313619 Bedogni F, et al., Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Front Mol Neurosci. 2021;14:686034
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory