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Trappc12 Gene Detail
Summary
  • Symbol
    Trappc12
  • Name
    trafficking protein particle complex 12
  • Synonyms
    CGI-87, D930014A20Rik, Ttc15
  • Feature Type
    protein coding gene
  • IDs
    MGI:2445089
    NCBI Gene: 217449
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:28740627-28800471 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 12, 11.10 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1622 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2445089
 protein coding gene Chr12:28740619-28801746 (-)
129S1/SvImJ MGP_129S1SvImJ_G0019646
 protein coding gene Chr12:26529534-26592755 (-)
A/J MGP_AJ_G0019613
 protein coding gene Chr12:25815373-25879432 (-)
AKR/J MGP_AKRJ_G0019584
 protein coding gene Chr12:26680549-26750962 (-)
BALB/cJ MGP_BALBcJ_G0019590
 protein coding gene Chr12:26066948-26127047 (-)
C3H/HeJ MGP_C3HHeJ_G0019394
 protein coding gene Chr12:26536123-26596040 (-)
C57BL/6NJ MGP_C57BL6NJ_G0020037
 protein coding gene Chr12:27385492-27447766 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0017662
 protein coding gene Chr12:25170962-25229258 (-)
CAST/EiJ MGP_CASTEiJ_G0018949
 protein coding gene Chr12:21498054-21559482 (-)
CBA/J MGP_CBAJ_G0019365
 protein coding gene Chr12:28347971-28416937 (-)
DBA/2J MGP_DBA2J_G0019479
 protein coding gene Chr12:25668590-25728675 (-)
FVB/NJ MGP_FVBNJ_G0019470
 protein coding gene Chr12:25468036-25529965 (-)
LP/J MGP_LPJ_G0019549
 protein coding gene Chr12:26616587-26681498 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0019505
 protein coding gene Chr12:27981281-28043943 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0020077
 protein coding gene Chr12:26193796-26260605 (-)
PWK/PhJ MGP_PWKPhJ_G0018716
 protein coding gene Chr12:20373247-20433243 (-)
SPRET/EiJ MGP_SPRETEiJ_G0018504
 protein coding gene Chr12:20778207-20842795 (-)
WSB/EiJ MGP_WSBEiJ_G0019000
 protein coding gene Chr12:26397249-26457617 (-)



Homology
more
  • Human Ortholog
    TRAPPC12, trafficking protein particle complex subunit 12
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAPPC12, trafficking protein particle complex subunit 12
  • Synonyms
    CGI-87, PEBAS, TTC-15, TTC15
  • Links
    NCBI Gene ID: 51112
    neXtProt AC: NX_Q8WVT3
    UniProt: Q8WVT3

  • Chr Location
    2p25.3; chr2:3379675-3485094 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    28
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    111
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000020628 Ensembl Gene Model | MGI Sequence Detail 59845 C57BL/6J ±  kb
transcript ENSMUST00000168129 Ensembl | MGI Sequence Detail 3230 Not Applicable  
polypeptide ENSMUSP00000127752 Ensembl | MGI Sequence Detail 797 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    9 Sequences
  • Protein Ontology
    PR:000029820 trafficking protein particle complex subunit 12
    (term hierarchy)
  • InterPro Domains
    IPR011990 Tetratricopeptide-like helical domain superfamily
    IPR019734 Tetratricopeptide repeat
  • GlyGen
    Q8K2L8 2 sites, 2 N-linked glycans (2 sites)
Molecular
Reagents
less
  • All nucleic 111
    cDNA 111

    Microarray probesets 3
References
more
  • Summaries
    All 36
    Developmental Gene Expression 1
    Gene Ontology 6
    Phenotypes 9
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:320033 Kim JJ, et al., TRAPP Complexes in Secretion and Autophagy. Front Cell Dev Biol. 2016;4:20
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory