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Rorb Gene Detail
Summary
  • Symbol
    Rorb
  • Name
    RAR-related orphan receptor beta
  • Synonyms
    hstp, MGC:38728, Nr1f2, Rorbeta, RZR-beta
  • Feature Type
    protein coding gene
  • IDs
    MGI:1343464
    NCBI Gene: 225998
  • Alliance
    gene page
  • Transcription Start Sites
    22 TSS
Location &
Maps
more
  • Sequence Map
    Chr19:18907969-19088560 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 19, 13.28 cM
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    5072 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1343464
 protein coding gene Chr19:18907966-19088560 (-)
129S1/SvImJ MGP_129S1SvImJ_G0024971
 protein coding gene Chr19:16825977-17010353 (-)
A/J MGP_AJ_G0024948
 protein coding gene Chr19:15877560-16064842 (-)
AKR/J MGP_AKRJ_G0024918
 protein coding gene Chr19:16506258-16686010 (-)
BALB/cJ MGP_BALBcJ_G0024947
 protein coding gene Chr19:15907787-16087443 (-)
C3H/HeJ MGP_C3HHeJ_G0024705
 protein coding gene Chr19:16454030-16643665 (-)
C57BL/6NJ MGP_C57BL6NJ_G0025389
 protein coding gene Chr19:17423137-17604833 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0022808
 protein coding gene Chr19:16253187-16433068 (-)
CAST/EiJ MGP_CASTEiJ_G0024173
 protein coding gene Chr19:16100128-16290005 (-)
CBA/J MGP_CBAJ_G0024683
 protein coding gene Chr19:18074314-18273468 (-)
DBA/2J MGP_DBA2J_G0024815
 protein coding gene Chr19:15908372-16089147 (-)
FVB/NJ MGP_FVBNJ_G0024776
 protein coding gene Chr19:15814507-15995700 (-)
LP/J MGP_LPJ_G0024899
 protein coding gene Chr19:16791325-16976091 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0024803
 protein coding gene Chr19:17935660-18129699 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0025444
 protein coding gene Chr19:16452066-16635929 (-)
PWK/PhJ MGP_PWKPhJ_G0023922
 protein coding gene Chr19:15444259-15644585 (-)
SPRET/EiJ MGP_SPRETEiJ_G0023727
 protein coding gene Chr19:15722878-15954021 (-)
WSB/EiJ MGP_WSBEiJ_G0024241
 protein coding gene Chr19:16503561-16692599 (-)



Homology
more
  • Human Ortholog
    RORB, RAR related orphan receptor B
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RORB, RAR related orphan receptor B
  • Synonyms
    bA133M9.1, EIG15, NR1F2, RORbeta, ROR-BETA, RZRB, RZR-BETA
  • Links
    NCBI Gene ID: 6096
    UniProt: Q92753

  • Chr Location
    9q21.13; chr9:74497335-74693177 (+)  GRCh38
Human Diseases
more
  • Diseases
    1 with human RORB associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    48 phenotypes from 11 alleles in 12 genetic backgrounds
    59 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for disruptions in this gene have impaired vision and a variety of behavioral abnormalities.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    39
  • GO References
    14
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    1405
  • Tissues
    318
  • cDNA Data
    17
  • Literature Summary
    152
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000036192 Ensembl Gene Model | MGI Sequence Detail 180592 C57BL/6J ±  kb
    transcript ENSMUST00000040153 Ensembl | MGI Sequence Detail 8759 Not Applicable  
    polypeptide ENSMUSP00000047597 Ensembl | MGI Sequence Detail 470 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      2 Sequences
    • Protein Ontology
      PR:000014164 nuclear receptor ROR-beta
      (term hierarchy)
    • InterPro Domains
      IPR001723 Nuclear hormone receptor
      IPR000536 Nuclear hormone receptor, ligand-binding domain
      IPR035500 Nuclear hormone receptor-like domain superfamily
      IPR003079 Nuclear receptor ROR
      IPR044101 Retinoid-related orphan receptors, DNA-binding domain
      IPR013088 Zinc finger, NHR/GATA-type
      IPR001628 Zinc finger, nuclear hormone receptor-type
    • GlyGen
      Q8R1B8 1 site, 1 O-linked glycan (1 site)
    Molecular
    Reagents
    less
    • All nucleic 39
      cDNA 23
      Primer pair 5
      Other 11

      Microarray probesets 6
    Other
    Accession IDs
    less
    MGI:3838140
    References
    more
    • Summaries
      All 233
      Developmental Gene Expression 152
      Gene Ontology 14
      Phenotypes 59
    • Earliest
      J:48923 Andre E, et al., Disruption of retinoid-related orphan receptor beta changes circadian behavior, causes retinal degeneration and leads to vacillans phenotype in mice. EMBO J. 1998 Jul 15;17(14):3867-77
    • Latest
      J:354227 Barao S, et al., Conserved transcriptional regulation by BRN1 and BRN2 in neocortical progenitors drives mammalian neural specification and neocortical expansion. Nat Commun. 2024 Sep 14;15(1):8043
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/19/2024
    MGI 6.24     		The Jackson Laboratory