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Rbm42 Gene Detail
Summary
  • Symbol
    Rbm42
  • Name
    RNA binding motif protein 42
  • Synonyms
    1700003D06Rik, 3100004P22Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915285
    NCBI Gene: 68035
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:30340420-30349653 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 18.95 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    319 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915285
 protein coding gene Chr7:30340420-30349742 (-)
129S1/SvImJ MGP_129S1SvImJ_G0032036
 protein coding gene Chr7:29653229-29666222 (-)
A/J MGP_AJ_G0032013
 protein coding gene Chr7:28846729-28857086 (-)
AKR/J MGP_AKRJ_G0031946
 protein coding gene Chr7:29579260-29593537 (-)
BALB/cJ MGP_BALBcJ_G0032020
 protein coding gene Chr7:29036160-29046484 (-)
C3H/HeJ MGP_C3HHeJ_G0031739
 protein coding gene Chr7:30042624-30051947 (-)
C57BL/6NJ MGP_C57BL6NJ_G0032486
 protein coding gene Chr7:30614911-30624234 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0029536
 protein coding gene Chr7:29875523-29885035 (-)
CAST/EiJ MGP_CASTEiJ_G0031073
 protein coding gene Chr7:23297146-23308045 (-)
CBA/J MGP_CBAJ_G0031705
 protein coding gene Chr7:32071340-32080663 (-)
DBA/2J MGP_DBA2J_G0031857
 protein coding gene Chr7:28575999-28586044 (-)
FVB/NJ MGP_FVBNJ_G0031814
 protein coding gene Chr7:28706291-28715614 (-)
LP/J MGP_LPJ_G0031938
 protein coding gene Chr7:29957530-29968090 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0031850
 protein coding gene Chr7:31308287-31318992 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0032514
 protein coding gene Chr7:29092376-29101706 (-)
PWK/PhJ MGP_PWKPhJ_G0030797
 protein coding gene Chr7:23615813-23625656 (-)
SPRET/EiJ MGP_SPRETEiJ_G0030632
 protein coding gene Chr7:20103428-20112869 (-)
WSB/EiJ MGP_WSBEiJ_G0031183
 protein coding gene Chr7:29479601-29489816 (-)



Homology
more
  • Human Ortholog
    RBM42, RNA binding motif protein 42
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RBM42, RNA binding motif protein 42
  • Links
    NCBI Gene ID: 79171
    neXtProt AC: NX_Q9BTD8
    UniProt: Q9BTD8

  • Chr Location
    19q13.12; chr19:35629030-35637686 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    6
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    714
  • Tissues
    8
  • cDNA Data
    172
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 68035 NCBI Gene Model | MGI Sequence Detail 9234 C57BL/6J ±  kb
transcript NM_133693 RefSeq | MGI Sequence Detail 1701 C57BL/6  
polypeptide Q91V81 UniProt | EBI | MGI Sequence Detail 478 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 172
    cDNA 172

    Microarray probesets 5
Other
Accession IDs
less
MGI:1919466
References
more
  • Summaries
    All 28
    Developmental Gene Expression 1
    Gene Ontology 6
    Phenotypes 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:204486 Zheng S, et al., A broadly applicable high-throughput screening strategy identifies new regulators of Dlg4 (Psd-95) alternative splicing. Genome Res. 2013 Jun;23(6):998-1007
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory