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Nphs2 Gene Detail
Summary
  • Symbol
    Nphs2
  • Name
    nephrosis 2, podocin
  • Synonyms
    podocin
  • Feature Type
    protein coding gene
  • IDs
    MGI:2157018
    NCBI Gene: 170484
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:156138297-156155605 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 67.71 cM, cytoband G3
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    635 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2157018
 protein coding gene Chr1:156138105-156155605 (+)
129S1/SvImJ MGP_129S1SvImJ_G0016622
 protein coding gene Chr1:161253532-161270540 (+)
A/J MGP_AJ_G0016603
 protein coding gene Chr1:154776077-154793132 (+)
AKR/J MGP_AKRJ_G0016569
 protein coding gene Chr1:159508938-159526023 (+)
BALB/cJ MGP_BALBcJ_G0016564
 protein coding gene Chr1:155274429-155291506 (+)
C3H/HeJ MGP_C3HHeJ_G0016388
 protein coding gene Chr1:159634275-159652256 (+)
C57BL/6NJ MGP_C57BL6NJ_G0017025
 protein coding gene Chr1:166768122-166786594 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014734
 protein coding gene Chr1:146975078-146992225 (+)
CAST/EiJ MGP_CASTEiJ_G0015968
 protein coding gene Chr1:159177737-159196062 (+)
CBA/J MGP_CBAJ_G0016363
 protein coding gene Chr1:172644645-172661708 (+)
DBA/2J MGP_DBA2J_G0016469
 protein coding gene Chr1:153733774-153752130 (+)
FVB/NJ MGP_FVBNJ_G0016467
 protein coding gene Chr1:152187325-152204707 (+)
LP/J MGP_LPJ_G0016540
 protein coding gene Chr1:162372653-162390607 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0016492
 protein coding gene Chr1:180222087-180239153 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0017061
 protein coding gene Chr1:159304009-159322347 (+)
PWK/PhJ MGP_PWKPhJ_G0015754
 protein coding gene Chr1:152810699-152828223 (+)
SPRET/EiJ MGP_SPRETEiJ_G0015541
 protein coding gene Chr1:158057730-158075558 (+)
WSB/EiJ MGP_WSBEiJ_G0016030
 protein coding gene Chr1:159402821-159420607 (+)



Homology
more
  • Human Ortholog
    NPHS2, NPHS2 stomatin family member, podocin
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    NPHS2, NPHS2 stomatin family member, podocin
  • Synonyms
    PDCN, SRN1
  • Links
    NCBI Gene ID: 7827
    neXtProt AC: NX_Q9NP85
    UniProt: Q9NP85

  • Chr Location
    1q25.2; chr1:179550539-179575952 (-)  GRCh38
Human Diseases
more
  • Diseases
    1 with Nphs2 mouse models; 1 with human NPHS2 associations

Human Disease Mouse Models
      
IDs
 View 4 models
      
IDs
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    3 with disease annotations
  • References
    3 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    54 phenotypes from 3 alleles in 5 genetic backgrounds
    3 images
    19 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for disruptions in this gene display kidney glomerular defects leading to blood and urine chemistry abnormalities. Death usually occurs before 5 weeks of age.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    19
  • GO References
    7
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    829
  • Tissues
    60
  • cDNA Data
    17
  • Literature Summary
    49
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000026602 Ensembl Gene Model | MGI Sequence Detail 17309 C57BL/6J ±  kb
    transcript ENSMUST00000027896 Ensembl | MGI Sequence Detail 3116 Not Applicable  
    polypeptide ENSMUSP00000027896 Ensembl | MGI Sequence Detail 385 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 22
      cDNA 17
      Primer pair 3
      Other 2

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:2138323
    References
    more
    • Summaries
      All 106
      Developmental Gene Expression 49
      Diseases 3
      Gene Ontology 7
      Phenotypes 19
    • Earliest
      J:73142 Schwarz K, et al., Podocin, a raft-associated component of the glomerular slit diaphragm, interacts with CD2AP and nephrin. J Clin Invest. 2001 Dec;108(11):1621-9
    • Latest
      J:347596 Higashi AY, et al., Bicellular Localization of Tricellular Junctional Protein Angulin-3/ILDR2 Allows Detection of Podocyte Injury. Am J Pathol. 2024 May;194(5):673-683
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    10/22/2024
    MGI 6.24     		The Jackson Laboratory