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Itfg1 Gene Detail
Summary
  • Symbol
    Itfg1
  • Name
    integrin alpha FG-GAP repeat containing 1
  • Synonyms
    2310047C21Rik, D8Wsu49e
  • Feature Type
    protein coding gene
  • IDs
    MGI:106419
    NCBI Gene: 71927
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:86444207-86567550 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 41.61 cM, cytoband C4
  • Mapping Data
    5 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2900 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_106419
 protein coding gene Chr8:86444186-86567578 (-)
129S1/SvImJ MGP_129S1SvImJ_G0033905
 protein coding gene Chr8:86673564-86807000 (-)
A/J MGP_AJ_G0033888
 protein coding gene Chr8:83259154-83384097 (-)
AKR/J MGP_AKRJ_G0033814
 protein coding gene Chr8:85738154-85869470 (-)
BALB/cJ MGP_BALBcJ_G0033881
 protein coding gene Chr8:83402157-83530742 (-)
C3H/HeJ MGP_C3HHeJ_G0033592
 protein coding gene Chr8:86360098-86491042 (-)
C57BL/6NJ MGP_C57BL6NJ_G0034402
 protein coding gene Chr8:90011986-90145905 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0031342
 protein coding gene Chr8:77041641-77165515 (-)
CAST/EiJ MGP_CASTEiJ_G0032922
 protein coding gene Chr8:85777727-85906437 (-)
CBA/J MGP_CBAJ_G0033567
 protein coding gene Chr8:93063776-93215318 (-)
DBA/2J MGP_DBA2J_G0033720
 protein coding gene Chr8:82895065-83023763 (-)
FVB/NJ MGP_FVBNJ_G0033668
 protein coding gene Chr8:81843542-81969017 (-)
LP/J MGP_LPJ_G0033812
 protein coding gene Chr8:86789815-86925580 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0033711
 protein coding gene Chr8:95587966-95726250 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0034419
 protein coding gene Chr8:85725043-85853322 (-)
PWK/PhJ MGP_PWKPhJ_G0032626
 protein coding gene Chr8:82142961-82270563 (-)
SPRET/EiJ MGP_SPRETEiJ_G0032461
 protein coding gene Chr8:84509335-84651731 (-)
WSB/EiJ MGP_WSBEiJ_G0033034
 protein coding gene Chr8:86151779-86282129 (-)



Homology
more
  • Human Ortholog
    ITFG1, integrin alpha FG-GAP repeat containing 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ITFG1, integrin alpha FG-GAP repeat containing 1
  • Synonyms
    2310047C21Rik, CDA08, LINKIN, LNKN-1, TIP
  • Links
    NCBI Gene ID: 81533
    neXtProt AC: NX_Q8TB96
    UniProt: Q8TB96

  • Chr Location
    16q12.1; chr16:47154387-47464149 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    35 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    791
  • Tissues
    12
  • cDNA Data
    123
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000031703 Ensembl Gene Model | MGI Sequence Detail 123344 C57BL/6J ±  kb
transcript ENSMUST00000034140 Ensembl | MGI Sequence Detail 3306 Not Applicable  
polypeptide ENSMUSP00000034140 Ensembl | MGI Sequence Detail 610 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 124
    cDNA 123
    Primer pair 1

    Microarray probesets 5
Other
Accession IDs
less
MGD-MRK-34113, MGI:1919177, MGI:2142495
References
more
  • Summaries
    All 64
    Developmental Gene Expression 2
    Gene Ontology 3
    Phenotypes 35
  • Earliest
    J:13049 Gruneberg H, Genetical studies on the skeleton of the mouse. XVIII. Three genes for syndactylism. J Genet. 1956;54(1):113-145
  • Latest
    J:348117 Okuma H, et al., N-terminal domain on dystroglycan enables LARGE1 to extend matriglycan on alpha-dystroglycan and prevents muscular dystrophy. Elife. 2023 Feb 1;12
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/29/2024
MGI 6.24 		The Jackson Laboratory