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Zmat2 Gene Detail
Summary
  • Symbol
    Zmat2
  • Name
    zinc finger, matrin type 2
  • Synonyms
    2610510D14Rik, 2900082I05Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913742
    NCBI Gene: 66492
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr18:36926976-36932713 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 18, 19.46 cM, cytoband B3
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    220 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913742
 protein coding gene Chr18:36926929-36932719 (+)
129S1/SvImJ MGP_129S1SvImJ_G0024293
 protein coding gene Chr18:35209645-35216666 (+)
A/J MGP_AJ_G0024259
 protein coding gene Chr18:33969118-33974943 (+)
AKR/J MGP_AKRJ_G0024227
 protein coding gene Chr18:34932987-34938738 (+)
BALB/cJ MGP_BALBcJ_G0024259
 protein coding gene Chr18:34017929-34023657 (+)
C3H/HeJ MGP_C3HHeJ_G0024026
 protein coding gene Chr18:34986736-34992505 (+)
C57BL/6NJ MGP_C57BL6NJ_G0024700
 protein coding gene Chr18:36447791-36453348 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0022140
 protein coding gene Chr18:34060994-34066752 (+)
CAST/EiJ MGP_CASTEiJ_G0023501
 protein coding gene Chr18:35002101-35008892 (+)
CBA/J MGP_CBAJ_G0023994
 protein coding gene Chr18:37523141-37528826 (+)
DBA/2J MGP_DBA2J_G0024126
 protein coding gene Chr18:33585719-33595053 (+)
FVB/NJ MGP_FVBNJ_G0024093
 protein coding gene Chr18:33295360-33301163 (+)
LP/J MGP_LPJ_G0024208
 protein coding gene Chr18:35241269-35248065 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0024121
 protein coding gene Chr18:38737324-38743067 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0024749
 protein coding gene Chr18:34793624-34799320 (+)
PWK/PhJ MGP_PWKPhJ_G0023245
 protein coding gene Chr18:33847309-33853147 (+)
SPRET/EiJ MGP_SPRETEiJ_G0023052
 protein coding gene Chr18:35045649-35052541 (+)
WSB/EiJ MGP_WSBEiJ_G0023564
 protein coding gene Chr18:34718023-34723762 (+)



Homology
more
  • Human Ortholog
    ZMAT2, zinc finger matrin-type 2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ZMAT2, zinc finger matrin-type 2
  • Synonyms
    Ptg-12, Snu23
  • Links
    NCBI Gene ID: 153527
    neXtProt AC: NX_Q96NC0
    UniProt: Q96NC0

  • Chr Location
    5q31.3; chr5:140698680-140706686 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    10
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    745
  • Tissues
    38
  • cDNA Data
    69
  • Literature Summary
    5
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 66492 NCBI Gene Model | MGI Sequence Detail 5738 C57BL/6J ±  kb
transcript NM_025594 RefSeq | MGI Sequence Detail 2257 C57BL/6  
polypeptide Q9CPW7 UniProt | EBI | MGI Sequence Detail 199 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000017679 zinc finger matrin-type protein 2
    (term hierarchy)
  • InterPro Domains
    IPR003604 Matrin/U1-C-like, C2H2-type zinc finger
    IPR040107 U4/U6.U5 small nuclear ribonucleoprotein component Snu23
    IPR036236 Zinc finger C2H2 superfamily
    IPR022755 Zinc finger, double-stranded RNA binding
Molecular
Reagents
less
  • All nucleic 70
    cDNA 69
    Primer pair 1

    Microarray probesets 5
Other
Accession IDs
less
MGI:1920313
References
more
  • Summaries
    All 31
    Developmental Gene Expression 5
    Gene Ontology 5
    Phenotypes 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:190636 Wiese CB, et al., A genome-wide screen to identify transcription factors expressed in pelvic ganglia of the lower urinary tract. Front Neurosci. 2012;6:130
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory