Lyrm1 MGI Mouse Gene Detail - MGI:1921169

Symbol

Lyrm1
Name

LYR motif containing 1
Synonyms

1110065L10Rik, 2310004B22Rik, 4930404J24Rik

Feature Type

protein coding gene
IDs

MGI:1921169
NCBI Gene: 73919
Alliance

gene page
Transcription Start Sites

2 TSS

Sequence Map

Chr7:119495038-119515979 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 7, 64.31 cM
Mapping Data

1 experiment

SNPs within 2kb

502 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1921169	protein coding gene	Chr7:119495038-119556186 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0032921	protein coding gene	Chr7:123831284-123854887 (+)
A/J	MGP_AJ_G0032904	protein coding gene	Chr7:120625330-120647571 (+)
AKR/J	MGP_AKRJ_G0032836	protein coding gene	Chr7:123741091-123763206 (+)
BALB/cJ	MGP_BALBcJ_G0032909	protein coding gene	Chr7:120358681-120380414 (+)
C3H/HeJ	MGP_C3HHeJ_G0032619	protein coding gene	Chr7:123646909-123668658 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0033415	protein coding gene	Chr7:128728448-128750876 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0030387	protein coding gene	Chr7:122057904-122077804 (+)
CAST/EiJ	MGP_CASTEiJ_G0031947	protein coding gene	Chr7:115399076-115422022 (+)
CBA/J	MGP_CBAJ_G0032592	protein coding gene	Chr7:133023376-133049342 (+)
DBA/2J	MGP_DBA2J_G0032744	protein coding gene	Chr7:118674954-118696253 (+)
FVB/NJ	MGP_FVBNJ_G0032697	protein coding gene	Chr7:118514913-118535742 (+)
LP/J	MGP_LPJ_G0032838	protein coding gene	Chr7:125284790-125307461 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0032729	protein coding gene	Chr7:134487552-134510103 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0033435	protein coding gene	Chr7:122715202-122737493 (+)
PWK/PhJ	MGP_PWKPhJ_G0031655	protein coding gene	Chr7:111593118-111614746 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0031501	protein coding gene	Chr7:109470358-109491622 (+)
WSB/EiJ	MGP_WSBEiJ_G0032060	protein coding gene	Chr7:123621845-123642922 (+)

Human Ortholog

LYRM1, LYR motif containing 1

Vertebrate Orthologs

3

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

LYRM1, LYR motif containing 1
Synonyms

A211C6.1
Links

HGNC:25074

NCBI Gene ID: 57149

neXtProt AC: NX_O43325

UniProt: O43325
Chr Location

16p12.3; chr16:20899868-20925006 (+) GRCh38

MGI Vertebrate Homology

Lyrm1 stringent orthology
1 human;1 mouse;1 rat;1 zebrafish
HCOP

vertebrate homology predictions: LYRM1
Gene Tree

Lyrm1

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Phenotype Summary

7 phenotype references

All Mutations and Alleles

39
Endonuclease-mediated

2
Gene trapped

35
Targeted

2
Find Mice (IMSR)

49 strains or lines available

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All GO Annotations

5
GO References

3

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

7

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

Xenbase lyrm1

ZFIN lyrm1

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All Sequences

79
RefSeq

33
UniProt

1
CCDS

CCDS21790.1

Ensembl

ENSMUSG00000030922 (Evidence)
NCBI Gene

73919

			Length	Strain/Species	Flank
genomic	73919	NCBI Gene Model \| MGI Sequence Detail	20942	C57BL/6J	± kb
transcript	NM_029610	RefSeq \| MGI Sequence Detail	1282	C57BL/6
polypeptide	Q9CQB7	UniProt \| EBI \| MGI Sequence Detail	122	Not Applicable

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UniProt

1 Sequence
Protein Ontology

PR:000010009 LYR motif-containing protein 1

(term hierarchy)
InterPro Domains

IPR008011 Complex 1 LYR protein domain

IPR045294 LYRM1, LYR domain

IPR040330 LYR motif-containing protein 1

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All nucleic 7

cDNA 7

Microarray probesets 3

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MGI:1916156, MGI:1923685

Summaries

All 27

Gene Ontology 3

Phenotypes 7
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for Lyrm1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr68763	Chr7:119495059-119495107 (+)	45 bp
Tssr68766	Chr7:119499322-119499325 (+)	4,286 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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