Tmem179b MGI Mouse Gene Detail - MGI:1914956

Tmem179b Gene Detail

Symbol

Tmem179b
Name

transmembrane protein 179B
Synonyms

0610031L02Rik, 1500003K22Rik, 1810059G22Rik

Feature Type

protein coding gene
IDs

MGI:1914956
NCBI Gene: 67706
Alliance

gene page
Transcription Start Sites

2 TSS

Sequence Map

Chr19:8749889-8751831 bp, - strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 19, 5.55 cM, cytoband A
Mapping Data

3 experiments

SNPs within 2kb

89 from dbSNP Build 142
Strain Annotations

1

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1914956	protein coding gene	Chr19:8749886-8751831 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Human Ortholog

TMEM179B, transmembrane protein 179B

Vertebrate Orthologs

4

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

TMEM179B, transmembrane protein 179B
Links

HGNC:33744

NCBI Gene ID: 374395

neXtProt AC: NX_Q7Z7N9

UniProt: Q7Z7N9
Chr Location

11q12.3; chr11:62787402-62790400 (+) GRCh38

MGI Vertebrate Homology

Tmem179b stringent orthology
1 human;1 mouse;1 rat;2 zebrafish
HCOP

vertebrate homology predictions: TMEM179B
Gene Tree

Tmem179b

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Phenotype Summary

3 phenotype references

All Mutations and Alleles

3
Gene trapped

3
Incidental Mutations

Mutagenetix , APF , CvDC
Find Mice (IMSR)

5 strains or lines available

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All GO Annotations

5
GO References

3

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

47

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

ZFIN tmem179ba

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All Sequences

24
RefSeq

4
UniProt

2
CCDS

CCDS29545.1

Ensembl

ENSMUSG00000118346 (Evidence)
NCBI Gene

67706

			Length	Strain/Species	Flank
genomic	ENSMUSG00000118346	Ensembl Gene Model \| MGI Sequence Detail	1943	C57BL/6J	± kb
transcript	ENSMUST00000010249	Ensembl \| MGI Sequence Detail	818	Not Applicable
polypeptide	ENSMUSP00000010249	Ensembl \| MGI Sequence Detail	219	Not Applicable

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UniProt

2 Sequences
Protein Ontology

PR:000031563 transmembrane protein 179B

(term hierarchy)
InterPro Domains

IPR029776 Transmembrane protein 179B

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All nucleic 47

cDNA 47

Microarray probesets 3

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MGI:1917014, MGI:1922642

Summaries

All 26

Gene Ontology 3

Phenotypes 3
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Tmem179b:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr158051	Chr19:8751795-8751834 (-)	16 bp
Tssr158050	Chr19:8750931-8750959 (-)	886 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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