Acbd6 MGI Mouse Gene Detail - MGI:1919732 - acyl-Coenzyme A binding domain containing 6

Symbol

Acbd6
Name

acyl-Coenzyme A binding domain containing 6
Synonyms

0610010G04Rik, 2610100E10Rik

Feature Type

protein coding gene
IDs

MGI:1919732
NCBI Gene: 72482
Alliance

gene page
Transcription Start Sites

4 TSS

Sequence Map

Chr1:155433845-155564120 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 1, 66.92 cM, cytoband G3
Mapping Data

3 experiments

SNPs within 2kb

3266 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1919732	protein coding gene	Chr1:155433845-155567076 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0016614	protein coding gene	Chr1:160488794-160628612 (+)
A/J	MGP_AJ_G0016595	protein coding gene	Chr1:154041995-154180310 (+)
AKR/J	MGP_AKRJ_G0016561	protein coding gene	Chr1:158783480-158916866 (+)
BALB/cJ	MGP_BALBcJ_G0016556	protein coding gene	Chr1:154554623-154687788 (+)
C3H/HeJ	MGP_C3HHeJ_G0016380	protein coding gene	Chr1:158906278-159041166 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0017017	protein coding gene	Chr1:166008586-166144467 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0014726	protein coding gene	Chr1:146266643-146407578 (+)
CAST/EiJ	MGP_CASTEiJ_G0015960	protein coding gene	Chr1:158431016-158566968 (+)
CBA/J	MGP_CBAJ_G0016355	protein coding gene	Chr1:171849308-171988411 (+)
DBA/2J	MGP_DBA2J_G0016461	protein coding gene	Chr1:153017358-153150326 (+)
FVB/NJ	MGP_FVBNJ_G0016459	protein coding gene	Chr1:151485311-151617717 (+)
LP/J	MGP_LPJ_G0016532	protein coding gene	Chr1:161636558-161774370 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0016484	protein coding gene	Chr1:179439880-179582219 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0017053	protein coding gene	Chr1:158584914-158720667 (+)
PWK/PhJ	MGP_PWKPhJ_G0015746	protein coding gene	Chr1:152088614-152224290 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0015533	protein coding gene	Chr1:157320988-157461842 (+)
WSB/EiJ	MGP_WSBEiJ_G0016022	protein coding gene	Chr1:158658741-158801648 (+)

Human Ortholog

ACBD6, acyl-CoA binding domain containing 6

Vertebrate Orthologs

3

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

ACBD6, acyl-CoA binding domain containing 6
Synonyms

NEDPM
Links

HGNC:23339

NCBI Gene ID: 84320

neXtProt AC: NX_Q9BR61

UniProt: Q9BR61
Chr Location

1q25.2-q25.3; chr1:180269653-180502954 (-) GRCh38

MGI Vertebrate Homology

Acbd6 stringent orthology
1 human;1 mouse;1 rat;1 zebrafish
HCOP

vertebrate homology predictions: ACBD6
Gene Tree

Acbd6

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Phenotype Summary

8 phenotype references

All Mutations and Alleles

15
Chemically induced (other)

2
Endonuclease-mediated

1
Gene trapped

9
Targeted

3
Genomic Mutations

2 involving Acbd6
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

25 strains or lines available

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All GO Annotations

5
GO References

2

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

12

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

Xenbase acbd6

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All Sequences

58
RefSeq

9
UniProt

3
CCDS

CCDS15385.1, CCDS48397.1, CCDS48398.1

Ensembl

ENSMUSG00000033701 (Evidence)
NCBI Gene

72482

			Length	Strain/Species	Flank
genomic	72482	NCBI Gene Model \| MGI Sequence Detail	130276	C57BL/6J	± kb
transcript	NM_028250	RefSeq \| MGI Sequence Detail	1504	C57BL/6
polypeptide	Q9D061	UniProt \| EBI \| MGI Sequence Detail	282	Not Applicable

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UniProt

3 Sequences
Protein Ontology

PR:000003613 acyl-CoA-binding domain-containing protein 6

(term hierarchy)
InterPro Domains

IPR000582 Acyl-CoA-binding protein, ACBP

IPR035984 Acyl-CoA binding protein superfamily

IPR002110 Ankyrin repeat

IPR036770 Ankyrin repeat-containing domain superfamily

IPR014352 FERM/acyl-CoA-binding protein superfamily

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All nucleic 13

cDNA 13

Microarray probesets 4

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MGI:1915591

Summaries

All 32

Gene Ontology 2

Phenotypes 8
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

TSS for Acbd6:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9537	Chr1:155433858-155433978 (+)	73 bp
Tssr9538	Chr1:155434065-155434148 (+)	262 bp
Tssr9539	Chr1:155434157-155434167 (+)	317 bp
Tssr9540	Chr1:155434243-155434298 (+)	426 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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