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Exosc7 Gene Detail
Summary
  • Symbol
    Exosc7
  • Name
    exosome component 7
  • Synonyms
    2610002K22Rik, mKIAA0116
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913696
    NCBI Gene: 66446
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:122942310-122965194 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 73.80 cM, cytoband F4
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    747 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913696
 protein coding gene Chr9:122942280-122965194 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035472
 protein coding gene Chr9:126135529-126158266 (+)
A/J MGP_AJ_G0035453
 protein coding gene Chr9:121307409-121330260 (+)
AKR/J MGP_AKRJ_G0035386
 protein coding gene Chr9:124567541-124590455 (+)
BALB/cJ MGP_BALBcJ_G0035449
 protein coding gene Chr9:121232799-121256188 (+)
C3H/HeJ MGP_C3HHeJ_G0035156
 protein coding gene Chr9:125008215-125031766 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035972
 protein coding gene Chr9:129626152-129649066 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032854
 protein coding gene Chr9:118452104-118474247 (+)
CAST/EiJ MGP_CASTEiJ_G0034461
 protein coding gene Chr9:125042689-125067084 (+)
CBA/J MGP_CBAJ_G0035124
 protein coding gene Chr9:134334323-134357237 (+)
DBA/2J MGP_DBA2J_G0035283
 protein coding gene Chr9:120760844-120783758 (+)
FVB/NJ MGP_FVBNJ_G0035230
 protein coding gene Chr9:119668274-119690983 (+)
LP/J MGP_LPJ_G0035362
 protein coding gene Chr9:126471732-126494545 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035271
 protein coding gene Chr9:135183105-135206107 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035991
 protein coding gene Chr9:125032132-125055046 (+)
PWK/PhJ MGP_PWKPhJ_G0034165
 protein coding gene Chr9:121215328-121238553 (+)
SPRET/EiJ MGP_SPRETEiJ_G0034002
 protein coding gene Chr9:125132398-125162219 (+)
WSB/EiJ MGP_WSBEiJ_G0034581
 protein coding gene Chr9:124870623-124897506 (+)



Homology
more
  • Human Ortholog
    EXOSC7, exosome component 7
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    EXOSC7, exosome component 7
  • Synonyms
    EAP1, hRrp42p, p8, RRP42, Rrp42p
  • Links
    NCBI Gene ID: 23016
    neXtProt AC: NX_Q15024
    UniProt: Q15024

  • Chr Location
    3p21.31; chr3:44975241-45036066 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 1 allele in 2 genetic backgrounds
    1 images
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele show complete embryonic lethality between implantation and somite formation. In vitro, blastocysts hatch from the zona pellucida but form irregular outgrowths after 3 days in culture.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    29
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    816
  • Tissues
    31
  • cDNA Data
    52
  • Literature Summary
    3
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 66446 NCBI Gene Model | MGI Sequence Detail 22885 C57BL/6J ±  kb
transcript NM_001418863 RefSeq | MGI Sequence Detail 1125 C57BL/6  
polypeptide Q9D0M0 UniProt | EBI | MGI Sequence Detail 291 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    4 Sequences
  • Protein Ontology
    PR:000007264 exosome complex component RRP42
    (term hierarchy)
  • InterPro Domains
    IPR036345 Exoribonuclease, PH domain 2 superfamily
    IPR001247 Exoribonuclease, phosphorolytic domain 1
    IPR015847 Exoribonuclease, phosphorolytic domain 2
    IPR050590 Exosome complex component Rrp42 subfamily
    IPR027408 PNPase/RNase PH domain superfamily
    IPR020568 Ribosomal protein uS5 domain 2-type superfamily
  • GlyGen
    Q9D0M0 1 site, 1 O-linked glycan (1 site)
Molecular
Reagents
less
  • All nucleic 53
    cDNA 52
    Primer pair 1

    Microarray probesets 1
Other
Accession IDs
less
MGI:2143265
References
more
  • Summaries
    All 36
    Developmental Gene Expression 3
    Gene Ontology 6
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/29/2024
MGI 6.24 		The Jackson Laboratory