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Ddx56 Gene Detail
Summary
  • Symbol
    Ddx56
  • Name
    DEAD box helicase 56
  • Synonyms
    2600001H07Rik, D11Ertd619e, DEAD (Asp-Glu-Ala-Asp) box polypeptide 56, NOH61
  • Feature Type
    protein coding gene
  • IDs
    MGI:1277172
    NCBI Gene: 52513
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:6208919-6217772 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 3.94 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    241 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1277172
 protein coding gene Chr11:6205343-6218389 (-)
129S1/SvImJ MGP_129S1SvImJ_G0018018
 protein coding gene Chr11:3352735-3361585 (-)
A/J MGP_AJ_G0017991
 protein coding gene Chr11:3219335-3228185 (-)
AKR/J MGP_AKRJ_G0017955
 protein coding gene Chr11:3379794-3388644 (-)
BALB/cJ MGP_BALBcJ_G0017959
 protein coding gene Chr11:3221857-3230699 (-)
C3H/HeJ MGP_C3HHeJ_G0017772
 protein coding gene Chr11:3257409-3266260 (-)
C57BL/6NJ MGP_C57BL6NJ_G0018411
 protein coding gene Chr11:3461027-3469880 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0016069
 protein coding gene Chr11:3115897-3125170 (-)
CAST/EiJ MGP_CASTEiJ_G0017334
 protein coding gene Chr11:3238697-3247554 (-)
CBA/J MGP_CBAJ_G0017747
 protein coding gene Chr11:3852614-3861467 (-)
DBA/2J MGP_DBA2J_G0017857
 protein coding gene Chr11:3137062-3145915 (-)
FVB/NJ MGP_FVBNJ_G0017849
 protein coding gene Chr11:3150841-3159694 (-)
LP/J MGP_LPJ_G0017928
 protein coding gene Chr11:3432674-3441516 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0017875
 protein coding gene Chr11:3418497-3427347 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0018451
 protein coding gene Chr11:3396221-3405074 (-)
PWK/PhJ MGP_PWKPhJ_G0017114
 protein coding gene Chr11:3161945-3170879 (-)
SPRET/EiJ MGP_SPRETEiJ_G0016911
 protein coding gene Chr11:3346948-3355817 (-)
WSB/EiJ MGP_WSBEiJ_G0017388
 protein coding gene Chr11:3228004-3236855 (-)



Homology
more
  • Human Ortholog
    DDX56, DEAD-box helicase 56
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    DDX56, DEAD-box helicase 56
  • Synonyms
    DDX21, DDX26, NOH61
  • Links
    NCBI Gene ID: 54606
    neXtProt AC: NX_Q9NY93
    UniProt: Q9NY93

  • Chr Location
    7p13; chr7:44565804-44575051 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    22
  • GO References
    8
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    121
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000004393 Ensembl Gene Model | MGI Sequence Detail 8854 C57BL/6J ±  kb
transcript ENSMUST00000004507 Ensembl | MGI Sequence Detail 1956 Not Applicable  
polypeptide ENSMUSP00000004507 Ensembl | MGI Sequence Detail 546 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 122
    cDNA 121
    Primer pair 1

    Microarray probesets 4
Other
Accession IDs
less
MGI:1915307
References
more
  • Summaries
    All 37
    Gene Ontology 8
    Phenotypes 8
  • Earliest
    J:70953 Johnson RS, et al., Targeting of nonexpressed genes in embryonic stem cells via homologous recombination. Science. 1989 Sep 15;245(4923):1234-6
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/22/2024
MGI 6.24 		The Jackson Laboratory