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Efcab10 Gene Detail
Summary
  • Symbol
    Efcab10
  • Name
    EF-hand calcium binding domain 10
  • Synonyms
    4930504H06Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1922290
    NCBI Gene: 75040
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:33444853-33451266 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 12, 14.34 cM, cytoband B2
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    313 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1922290
 protein coding gene Chr12:33444824-33451268 (+)
129S1/SvImJ MGP_129S1SvImJ_G0019675
 protein coding gene Chr12:31458618-31467081 (+)
A/J MGP_AJ_G0019642
 protein coding gene Chr12:30522632-30529101 (+)
AKR/J MGP_AKRJ_G0019613
 protein coding gene Chr12:31510896-31517359 (+)
BALB/cJ MGP_BALBcJ_G0019619
 protein coding gene Chr12:30742300-30748793 (+)
C3H/HeJ MGP_C3HHeJ_G0019423
 protein coding gene Chr12:31365313-31372596 (+)
C57BL/6NJ MGP_C57BL6NJ_G0020066
 protein coding gene Chr12:32397694-32404109 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0017691
 protein coding gene Chr12:29806764-29812482 (+)
CAST/EiJ MGP_CASTEiJ_G0018978
 protein coding gene Chr12:26420797-26428747 (+)
CBA/J MGP_CBAJ_G0019395
 protein coding gene Chr12:33436262-33442978 (+)
DBA/2J MGP_DBA2J_G0019508
 protein coding gene Chr12:30340237-30346652 (+)
FVB/NJ MGP_FVBNJ_G0019499
 protein coding gene Chr12:30132050-30138463 (+)
LP/J MGP_LPJ_G0019578
 protein coding gene Chr12:31535805-31542220 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0019534
 protein coding gene Chr12:33054355-33060770 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0020106
 protein coding gene Chr12:31013076-31019514 (+)
PWK/PhJ MGP_PWKPhJ_G0018745
 protein coding gene Chr12:25115886-25122386 (+)
SPRET/EiJ MGP_SPRETEiJ_G0018533
 protein coding gene Chr12:25656114-25663430 (+)
WSB/EiJ MGP_WSBEiJ_G0019028
 protein coding gene Chr12:31258428-31265969 (+)



Homology
more
  • Human Ortholog
    EFCAB10, EF-hand calcium binding domain 10
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    EFCAB10, EF-hand calcium binding domain 10
  • Links
    NCBI Gene ID: 100130771
    UniProt: A6NFE3

  • Chr Location
    7q22.3; chr7:105565120-105600875 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    714
  • Tissues
    3
  • cDNA Data
    15
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000020562 Ensembl Gene Model | MGI Sequence Detail 6414 C57BL/6J ±  kb
transcript ENSMUST00000020878 Ensembl | MGI Sequence Detail 673 Not Applicable  
polypeptide ENSMUSP00000020878 Ensembl | MGI Sequence Detail 132 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000032587 EF-hand calcium-binding domain-containing protein 10
    (term hierarchy)
  • InterPro Domains
    IPR039879 EF-hand calcium-binding domain-containing protein 10
    IPR049760 EF-hand calcium-binding domain-containing protein 10, dimerization/docking domain
    IPR002048 EF-hand domain
    IPR011992 EF-hand domain pair
Molecular
Reagents
less
  • All nucleic 16
    cDNA 15
    Primer pair 1

    Microarray probesets 2
References
more
  • Summaries
    All 24
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:240319 Stauber M, et al., Identification of FOXJ1 effectors during ciliogenesis in the foetal respiratory epithelium and embryonic left-right organiser of the mouse. Dev Biol. 2017 Mar 15;423(2):170-188
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory