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Tmem54 Gene Detail
Summary
  • Symbol
    Tmem54
  • Name
    transmembrane protein 54
  • Synonyms
    1810017F10Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913510
    NCBI Gene: 66260
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:128999341-129005419 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 62.86 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    80 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913510
 protein coding gene Chr4:128999321-129005419 (+)
129S1/SvImJ MGP_129S1SvImJ_G0028812
 protein coding gene Chr4:130962988-130969051 (+)
A/J MGP_AJ_G0028771
 protein coding gene Chr4:125778445-125784523 (+)
AKR/J MGP_AKRJ_G0028724
 protein coding gene Chr4:129267999-129274077 (+)
BALB/cJ MGP_BALBcJ_G0028794
 protein coding gene Chr4:126357805-126363882 (+)
C3H/HeJ MGP_C3HHeJ_G0028508
 protein coding gene Chr4:129315390-129321470 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029236
 protein coding gene Chr4:135923248-135929316 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026509
 protein coding gene Chr4:118905862-118912089 (+)
CAST/EiJ MGP_CASTEiJ_G0027942
 protein coding gene Chr4:127491032-127497058 (+)
CBA/J MGP_CBAJ_G0028474
 protein coding gene Chr4:139238989-139245065 (+)
DBA/2J MGP_DBA2J_G0028623
 protein coding gene Chr4:126205613-126211689 (+)
FVB/NJ MGP_FVBNJ_G0028590
 protein coding gene Chr4:124961638-124967694 (+)
LP/J MGP_LPJ_G0028724
 protein coding gene Chr4:131273106-131279171 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028616
 protein coding gene Chr4:144147181-144153294 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029274
 protein coding gene Chr4:129635224-129641302 (+)
PWK/PhJ MGP_PWKPhJ_G0027663
 protein coding gene Chr4:122778024-122784132 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027489
 protein coding gene Chr4:125489596-125495614 (+)
WSB/EiJ MGP_WSBEiJ_G0028021
 protein coding gene Chr4:129741867-129747971 (+)



Homology
more
  • Human Ortholog
    TMEM54, transmembrane protein 54
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TMEM54, transmembrane protein 54
  • Synonyms
    BCLP, CAC-1, CAC1
  • Links
    NCBI Gene ID: 113452
    neXtProt AC: NX_Q969K7
    UniProt: Q969K7

  • Chr Location
    1p35.1; chr1:32894594-32901438 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
  • All Mutations and Alleles
    7
  • Chemically induced (other)
    2
  • Radiation induced
    1
  • Targeted
    4
  • Genomic Mutations
    4 involving Tmem54
  • Find Mice (IMSR)
    13 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    800
  • Tissues
    94
  • cDNA Data
    42
  • Literature Summary
    3
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000028786 Ensembl Gene Model | MGI Sequence Detail 6079 C57BL/6J ±  kb
transcript ENSMUST00000106064 Ensembl | MGI Sequence Detail 1066 Not Applicable  
polypeptide ENSMUSP00000101679 Ensembl | MGI Sequence Detail 219 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 42
    cDNA 42

    Microarray probesets 3
Other
Accession IDs
less
MGI:2140322
References
more
  • Summaries
    All 33
    Developmental Gene Expression 3
    Gene Ontology 1
    Phenotypes 9
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:220468 Walentin K, et al., A Grhl2-dependent gene network controls trophoblast branching morphogenesis. Development. 2015 Mar 15;142(6):1125-36
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory