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Lysmd2 Gene Detail
Summary
  • Symbol
    Lysmd2
  • Name
    LysM, putative peptidoglycan-binding, domain containing 2
  • Synonyms
    2210402C18Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1917332
    NCBI Gene: 70082
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:75533023-75545053 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 42.32 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    445 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917332
 protein coding gene Chr9:75532403-75545055 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035043
 protein coding gene Chr9:75953488-75965478 (+)
A/J MGP_AJ_G0035024
 protein coding gene Chr9:73298777-73310845 (+)
AKR/J MGP_AKRJ_G0034953
 protein coding gene Chr9:75048429-75060497 (+)
BALB/cJ MGP_BALBcJ_G0035016
 protein coding gene Chr9:72968656-72980724 (+)
C3H/HeJ MGP_C3HHeJ_G0034725
 protein coding gene Chr9:75516747-75528815 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035534
 protein coding gene Chr9:77966041-77978082 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032445
 protein coding gene Chr9:72651014-72664424 (+)
CAST/EiJ MGP_CASTEiJ_G0034047
 protein coding gene Chr9:75864529-75877572 (+)
CBA/J MGP_CBAJ_G0034697
 protein coding gene Chr9:80643408-80655476 (+)
DBA/2J MGP_DBA2J_G0034857
 protein coding gene Chr9:72965887-72978075 (+)
FVB/NJ MGP_FVBNJ_G0034799
 protein coding gene Chr9:72265634-72278607 (+)
LP/J MGP_LPJ_G0034938
 protein coding gene Chr9:76200985-76213045 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0034840
 protein coding gene Chr9:81717565-81729569 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035557
 protein coding gene Chr9:75213487-75225532 (+)
PWK/PhJ MGP_PWKPhJ_G0033751
 protein coding gene Chr9:73254966-73268952 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033584
 protein coding gene Chr9:75446925-75459624 (+)
WSB/EiJ MGP_WSBEiJ_G0034159
 protein coding gene Chr9:75126150-75138284 (+)



Homology
more
  • Human Ortholog
    LYSMD2, LysM domain containing 2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    LYSMD2, LysM domain containing 2
  • Links
    NCBI Gene ID: 256586
    neXtProt AC: NX_Q8IV50
    UniProt: Q8IV50

  • Chr Location
    15q21.2; chr15:51723011-51751585 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
  • All Mutations and Alleles
    7
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    2
  • Gene trapped
    1
  • Targeted
    3
  • Genomic Mutations
    1 involving Lysmd2
  • Incidental Mutations
    CvDC
  • Find Mice (IMSR)
    14 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    714
  • Tissues
    2
  • cDNA Data
    21
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000032184 Ensembl Gene Model | MGI Sequence Detail 12031 C57BL/6J ±  kb
transcript ENSMUST00000034702 Ensembl | MGI Sequence Detail 1189 Not Applicable  
polypeptide ENSMUSP00000034702 Ensembl | MGI Sequence Detail 215 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • Protein Ontology
    PR:000029616 LysM and putative peptidoglycan-binding domain-containing protein 2
    (term hierarchy)
  • InterPro Domains
    IPR045030 LysM and putative peptidoglycan-binding domain-containing protein 1-4
    IPR018392 LysM domain
    IPR036779 LysM domain superfamily
Molecular
Reagents
less
  • All nucleic 21
    cDNA 21

    Microarray probesets 3
Other
Accession IDs
less
MGI:2143256, MGI:2143312
References
more
  • Summaries
    All 27
    Developmental Gene Expression 2
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:294106 Soulez M, et al., Reevaluation of the Role of Extracellular Signal-Regulated Kinase 3 in Perinatal Survival and Postnatal Growth Using New Genetically Engineered Mouse Models. Mol Cell Biol. 2019 Mar 15;39(6)
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory