About   Help   FAQ
Galnt16 Gene Detail
Summary
  • Symbol
    Galnt16
  • Name
    polypeptide N-acetylgalactosaminyltransferase 16
  • Synonyms
    5730405L21Rik, Galntl1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1917754
    NCBI Gene: 108760
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:80565245-80650672 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 12, 36.79 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2498 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1917754
 protein coding gene Chr12:80565051-80677746 (+)
129S1/SvImJ MGP_129S1SvImJ_G0019889
 protein coding gene Chr12:80884481-80979760 (+)
A/J MGP_AJ_G0019847
 protein coding gene Chr12:77956472-78043280 (+)
AKR/J MGP_AKRJ_G0019822
 protein coding gene Chr12:80088245-80175677 (+)
BALB/cJ MGP_BALBcJ_G0019826
 protein coding gene Chr12:78209360-78296655 (+)
C3H/HeJ MGP_C3HHeJ_G0019632
 protein coding gene Chr12:80556066-80646261 (+)
C57BL/6NJ MGP_C57BL6NJ_G0020278
 protein coding gene Chr12:83256000-83351999 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0017897
 protein coding gene Chr12:74950803-75036901 (+)
CAST/EiJ MGP_CASTEiJ_G0019182
 protein coding gene Chr12:75409716-75497457 (+)
CBA/J MGP_CBAJ_G0019603
 protein coding gene Chr12:86508674-86598926 (+)
DBA/2J MGP_DBA2J_G0019718
 protein coding gene Chr12:77569686-77654623 (+)
FVB/NJ MGP_FVBNJ_G0019704
 protein coding gene Chr12:76391628-76477599 (+)
LP/J MGP_LPJ_G0019790
 protein coding gene Chr12:80816788-80904175 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0019743
 protein coding gene Chr12:89527687-89619547 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0020313
 protein coding gene Chr12:79613989-79702946 (+)
PWK/PhJ MGP_PWKPhJ_G0018948
 protein coding gene Chr12:71959726-72046497 (+)
SPRET/EiJ MGP_SPRETEiJ_G0018742
 protein coding gene Chr12:74107582-74206014 (+)
WSB/EiJ MGP_WSBEiJ_G0019235
 protein coding gene Chr12:80256152-80344749 (+)



Homology
more
  • Human Ortholog
    GALNT16, polypeptide N-acetylgalactosaminyltransferase 16
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    GALNT16, polypeptide N-acetylgalactosaminyltransferase 16
  • Synonyms
    GalNAc-T16, GALNACT16, GALNTL1
  • Links
    NCBI Gene ID: 57452
    neXtProt AC: NX_Q8N428
    UniProt: Q8N428

  • Chr Location
    14q24.1; chr14:69259277-69386337 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
  • All Mutations and Alleles
    7
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    2
  • Gene trapped
    4
  • Genomic Mutations
    1 involving Galnt16
  • Incidental Mutations
    APF , CvDC
  • Find Mice (IMSR)
    31 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    12
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    872
  • Tissues
    109
  • cDNA Data
    55
  • Literature Summary
    6
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 108760 NCBI Gene Model | MGI Sequence Detail 85428 C57BL/6J ±  kb
transcript NM_001361700 RefSeq | MGI Sequence Detail 4034 C57BL/6  
polypeptide Q9JJ61 UniProt | EBI | MGI Sequence Detail 558 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 56
    cDNA 55
    Primer pair 1

    Microarray probesets 1
Other
Accession IDs
less
MGI:2144807
References
more
  • Summaries
    All 38
    Developmental Gene Expression 6
    Gene Ontology 6
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:285242 Peluso G, et al., Loss of the disease-associated glycosyltransferase Galnt3 alters Muc10 glycosylation and the composition of the oral microbiome. J Biol Chem. 2020 Jan 31;295(5):1411-1425
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory