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Trappc2l Gene Detail
Summary
  • Symbol
    Trappc2l
  • Name
    trafficking protein particle complex 2L
  • Synonyms
    1810017G16Rik, Tca17
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916295
    NCBI Gene: 59005
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:123338365-123342330 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 71.92 cM, cytoband E1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    257 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916295
 protein coding gene Chr8:123338365-123343399 (+)
129S1/SvImJ MGP_129S1SvImJ_G0034234
 protein coding gene Chr8:126172290-126178452 (+)
A/J MGP_AJ_G0034214
 protein coding gene Chr8:120941602-120945572 (+)
AKR/J MGP_AKRJ_G0034141
 protein coding gene Chr8:124468233-124472203 (+)
BALB/cJ MGP_BALBcJ_G0034208
 protein coding gene Chr8:121141138-121145958 (+)
C3H/HeJ MGP_C3HHeJ_G0033918
 protein coding gene Chr8:125169754-125174733 (+)
C57BL/6NJ MGP_C57BL6NJ_G0034727
 protein coding gene Chr8:130379791-130383753 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0031669
 protein coding gene Chr8:113773308-113777310 (+)
CAST/EiJ MGP_CASTEiJ_G0033246
 protein coding gene Chr8:125248501-125254656 (+)
CBA/J MGP_CBAJ_G0033891
 protein coding gene Chr8:135168466-135172428 (+)
DBA/2J MGP_DBA2J_G0034048
 protein coding gene Chr8:120130306-120134254 (+)
FVB/NJ MGP_FVBNJ_G0033991
 protein coding gene Chr8:119276783-119280925 (+)
LP/J MGP_LPJ_G0034137
 protein coding gene Chr8:126296648-126302242 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0034038
 protein coding gene Chr8:137332167-137337948 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0034746
 protein coding gene Chr8:124650294-124654256 (+)
PWK/PhJ MGP_PWKPhJ_G0032947
 protein coding gene Chr8:119953422-119957596 (+)
SPRET/EiJ MGP_SPRETEiJ_G0032787
 protein coding gene Chr8:123378885-123384086 (+)
WSB/EiJ MGP_WSBEiJ_G0033362
 protein coding gene Chr8:125405203-125410604 (+)



Homology
more
  • Human Ortholog
    TRAPPC2L, trafficking protein particle complex subunit 2L
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAPPC2L, trafficking protein particle complex subunit 2L
  • Synonyms
    HSPC176, PERRB
  • Links
    NCBI Gene ID: 51693
    neXtProt AC: NX_Q9UL33
    UniProt: Q9UL33

  • Chr Location
    16q24.3; chr16:88856220-88862686 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    16 phenotypes from 1 allele in 1 genetic background
    5 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    17
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    708
  • Tissues
    1
  • cDNA Data
    73
  • Literature Summary
    1
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 59005 NCBI Gene Model | MGI Sequence Detail 3966 C57BL/6J ±  kb
    transcript NM_021502 RefSeq | MGI Sequence Detail 634 C57BL/6  
    polypeptide Q9JME7 UniProt | EBI | MGI Sequence Detail 139 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      1 Sequence
    • Protein Ontology
      PR:000016613 trafficking protein particle complex subunit 2-like protein
      (term hierarchy)
    • InterPro Domains
      IPR011012 Longin-like domain superfamily
      IPR006722 Trafficking protein particle complex subunit 2
      IPR044760 Trafficking protein particle complex subunit 2-like
    Molecular
    Reagents
    less
    • All nucleic 74
      cDNA 73
      Primer pair 1

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:1927554
    References
    more
    • Summaries
      All 29
      Developmental Gene Expression 1
      Gene Ontology 5
      Phenotypes 5
    • Earliest
      J:64911 Inoue S, et al., Growth suppression of Escherichia coli by induction of expression of mammalian genes with transmembrane or ATPase domains. Biochem Biophys Res Commun. 2000 Feb 16;268(2):553-61
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/19/2024
    MGI 6.24     		The Jackson Laboratory