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Syngr4 Gene Detail
Summary
  • Symbol
    Syngr4
  • Name
    synaptogyrin 4
  • Synonyms
    1700016O14Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1928903
    NCBI Gene: 58867
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:45535502-45546152 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 29.58 cM, cytoband B3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    406 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1928903
 protein coding gene Chr7:45534646-45546152 (-)
129S1/SvImJ MGP_129S1SvImJ_G0032253
 protein coding gene Chr7:46211167-46222621 (-)
A/J MGP_AJ_G0032232
 protein coding gene Chr7:45283963-45295403 (-)
AKR/J MGP_AKRJ_G0032168
 protein coding gene Chr7:46559368-46570817 (-)
BALB/cJ MGP_BALBcJ_G0032244
 protein coding gene Chr7:45283973-45295421 (-)
C3H/HeJ MGP_C3HHeJ_G0031959
 protein coding gene Chr7:47039181-47050656 (-)
C57BL/6NJ MGP_C57BL6NJ_G0032736
 protein coding gene Chr7:48475281-48486738 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0029750
 protein coding gene Chr7:47836617-47848371 (-)
CAST/EiJ MGP_CASTEiJ_G0031287
 protein coding gene Chr7:38487025-38498406 (-)
CBA/J MGP_CBAJ_G0031924
 protein coding gene Chr7:50100100-50111579 (-)
DBA/2J MGP_DBA2J_G0032081
 protein coding gene Chr7:44964005-44975447 (-)
FVB/NJ MGP_FVBNJ_G0032033
 protein coding gene Chr7:44743492-44758669 (-)
LP/J MGP_LPJ_G0032160
 protein coding gene Chr7:46918743-46930190 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0032070
 protein coding gene Chr7:48769090-48780537 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0032751
 protein coding gene Chr7:45758931-45770382 (-)
PWK/PhJ MGP_PWKPhJ_G0031010
 protein coding gene Chr7:38334778-38346466 (-)
SPRET/EiJ MGP_SPRETEiJ_G0030848
 protein coding gene Chr7:33788638-33800092 (-)
WSB/EiJ MGP_WSBEiJ_G0031405
 protein coding gene Chr7:46262123-46275281 (-)



Homology
more
  • Human Ortholog
    SYNGR4, synaptogyrin 4
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SYNGR4, synaptogyrin 4
  • Links
    NCBI Gene ID: 23546
    neXtProt AC: NX_O95473
    UniProt: O95473

  • Chr Location
    19q13.33; chr19:48364268-48376377 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    7 phenotype references
Male mice homozygous for a mutation are viable and show normal fertility.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    2
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    10
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 58867 NCBI Gene Model | MGI Sequence Detail 10651 C57BL/6J ±  kb
transcript NM_021482 RefSeq | MGI Sequence Detail 966 C57BL/6  
polypeptide Q9Z1L2 UniProt | EBI | MGI Sequence Detail 233 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 10
    cDNA 10

    Microarray probesets 3
Other
Accession IDs
less
MGI:1923664
References
more
  • Summaries
    All 29
    Gene Ontology 2
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory