About   Help   FAQ
Extl3 Gene Detail
Summary
  • Symbol
    Extl3
  • Name
    exostosin-like glycosyltransferase 3
  • Synonyms
    2900009G18Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1860765
    NCBI Gene: 54616
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:65289509-65387304 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 33.86 cM, cytoband D1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2517 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1860765
 protein coding gene Chr14:65289508-65387322 (-)
129S1/SvImJ MGP_129S1SvImJ_G0021476
 protein coding gene Chr14:59641648-59687764 (-)
A/J MGP_AJ_G0021435
 protein coding gene Chr14:58274320-58321750 (-)
AKR/J MGP_AKRJ_G0021411
 protein coding gene Chr14:60295588-60343287 (-)
BALB/cJ MGP_BALBcJ_G0021441
 protein coding gene Chr14:58219896-58266291 (-)
C3H/HeJ MGP_C3HHeJ_G0021218
 protein coding gene Chr14:59944518-59990407 (-)
C57BL/6NJ MGP_C57BL6NJ_G0021880
 protein coding gene Chr14:62419493-62470392 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0019420
 protein coding gene Chr14:56208026-56254263 (-)
CAST/EiJ MGP_CASTEiJ_G0020735
 protein coding gene Chr14:56430508-56475814 (-)
CBA/J MGP_CBAJ_G0021185
 protein coding gene Chr14:64291612-64347287 (-)
DBA/2J MGP_DBA2J_G0021308
 protein coding gene Chr14:57926532-57972443 (-)
FVB/NJ MGP_FVBNJ_G0021287
 protein coding gene Chr14:57328741-57375294 (-)
LP/J MGP_LPJ_G0021383
 protein coding gene Chr14:60677873-60724579 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0021316
 protein coding gene Chr14:63432507-63480390 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0021903
 protein coding gene Chr14:59476036-59524307 (-)
PWK/PhJ MGP_PWKPhJ_G0020479
 protein coding gene Chr14:54634433-54678819 (-)
SPRET/EiJ MGP_SPRETEiJ_G0020312
 protein coding gene Chr14:55440276-55493091 (-)
WSB/EiJ MGP_WSBEiJ_G0020788
 protein coding gene Chr14:59789127-59835294 (-)



Homology
more
  • Human Ortholog
    EXTL3, exostosin like glycosyltransferase 3
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    EXTL3, exostosin like glycosyltransferase 3
  • Synonyms
    BOTV, EXTL1L, EXTR1, ISDNA, REGR, RPR
  • Links
    NCBI Gene ID: 2137
    neXtProt AC: NX_O43909
    UniProt: O43909

  • Chr Location
    8p21.1; chr8:28600469-28756561 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    22 phenotypes from 3 alleles in 2 genetic backgrounds
    13 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a null mutation display embryonic lethality during organogenesis and lack heparan sulfate derived disaccharides.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    38
  • GO References
    17
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    1134
  • Tissues
    231
  • cDNA Data
    11
  • Literature Summary
    7
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000021978 Ensembl Gene Model | MGI Sequence Detail 97796 C57BL/6J ±  kb
    transcript ENSMUST00000225633 Ensembl | MGI Sequence Detail 6013 Not Applicable  
    polypeptide ENSMUSP00000153547 Ensembl | MGI Sequence Detail 919 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 15
      cDNA 12
      Primer pair 2
      Other 1

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:1925654, MGI:2145751
    References
    more
    • Summaries
      All 57
      Developmental Gene Expression 7
      Gene Ontology 17
      Phenotypes 13
    • Earliest
      J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
    Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory