rs29176517 SNP Detail

Summary

• ID
  rs29176517
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:113386059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTG GAATGGGCAC ATGCAGATCT
  Y
  TGTTTTTGCC TCCGTAGTGG ATTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38984036	mCV24919649	ABI	CRAMUS_MOUSE	f	SNP		C	T				T		C
ss51058471	NES14371702	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	T		T	C	C	C		T	T	T	T		T
ss138742142	ENSMUSSNP5699543	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						C
ss324175458	CHEV_12_114660650	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29176517					SNP	C	C	T	T	C	T	T	T	C	C	C	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51058471	NES14371702	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:113386059 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighg	Immunoglobulin heavy chain (gamma polypeptide)	within coordinates
Ighm	immunoglobulin heavy constant mu	within coordinates
Rr403535	regulatory region 403535	1891 bp upstream
Tssr115499	transcription start site region 115499	822 bp downstream
Tssr115500	transcription start site region 115500	778 bp downstream
Tssr115501	transcription start site region 115501	364 bp downstream
Tssr115502	transcription start site region 115502	338 bp downstream
Tssr115503	transcription start site region 115503	90 bp upstream
Tssr117966	transcription start site region 117966	1307 bp upstream
Tssr117967	transcription start site region 117967	1265 bp upstream
Tssr117968	transcription start site region 117968	1240 bp upstream
Tssr117969	transcription start site region 117969	998 bp upstream
Tssr117970	transcription start site region 117970	947 bp upstream
Tssr117971	transcription start site region 117971	747 bp upstream
Tssr117972	transcription start site region 117972	427 bp upstream
Tssr117973	transcription start site region 117973	396 bp upstream
Tssr117974	transcription start site region 117974	321 bp upstream
Tssr117975	transcription start site region 117975	268 bp upstream
Tssr117976	transcription start site region 117976	210 bp upstream
Tssr117977	transcription start site region 117977	168 bp upstream
Tssr117978	transcription start site region 117978	25 bp upstream
Tssr117979	transcription start site region 117979	72 bp downstream
Tssr117980	transcription start site region 117980	93 bp downstream
Tssr117981	transcription start site region 117981	192 bp downstream
Tssr117982	transcription start site region 117982	213 bp downstream
Tssr117983	transcription start site region 117983	253 bp downstream
Tssr117984	transcription start site region 117984	296 bp downstream