rs29711463 SNP Detail

Summary

• ID
  rs29711463
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:10395022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAGTGACTT GACAGCTTTC TGCTGACCTC TCCAGACTCA
  CCCCAGGCTT GACCGCACTA ACACTAACGT GGGCCCCTAG CCCAGGGAAG CATGGAAGTG
  S
  TCATGCCCAG GAAAGGTGGC CGCTCTGCCT GCTTCCCAGG ACAAGTCACA CCCTGTGCTT
  CCCCTGTAAG AGCGTCAGGT ACACGGAGAA GCGCAGGGA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45513705	mCV25008381	ABI	CRAMUS_MOUSE	f	SNP		C	C					C		G
ss49558670	NES12890670	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		G	G	C	C		G	C	C	G		G
ss134581313	ENSMUSSNP2304926	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							G
ss320653514	CHEV_3_10329962	CHEVERUD	SCREENING_POP	f	SNP													C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29711463					SNP	C	C	C	C	C	C	C	C	G	G	C	C	C	G	C	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49558670	NES12890670	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:10395022 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12981	CpG island 12981	1021 bp proximal
Gm38303	predicted gene, 38303	within coordinates
Impa1	inositol (myo)-1(or 4)-monophosphatase 1	within coordinates
Rr76995	regulatory region 76995	within coordinates
Slc10a5	solute carrier family 10 (sodium/bile acid cotransporter family), member 5	1772 bp downstream
Tssr32612	transcription start site region 32612	1322 bp downstream
Tssr32613	transcription start site region 32613	1396 bp downstream