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Madcam1 Gene Detail
Summary
  • Symbol
    Madcam1
  • Name
    mucosal vascular addressin cell adhesion molecule 1
  • Synonyms
    MGC:35998
  • Feature Type
    protein coding gene
  • IDs
    MGI:103579
    NCBI Gene: 17123
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:79500393-79504371 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 10, 39.72 cM, cytoband C1-C2
  • Mapping Data
    6 experiments
Strain
Comparison
more
  • SNPs within 2kb
    124 from dbSNP Build 142
  • Strain Annotations
    18
  • PCR
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_103579
 protein coding gene Chr10:79500393-79504376 (+)
129S1/SvImJ MGP_129S1SvImJ_G0017450
 protein coding gene Chr10:80201100-80205062 (+)
A/J MGP_AJ_G0017428
 protein coding gene Chr10:77414571-77418533 (+)
AKR/J MGP_AKRJ_G0017389
 protein coding gene Chr10:79520268-79524228 (+)
BALB/cJ MGP_BALBcJ_G0017390
 protein coding gene Chr10:77643438-77647400 (+)
C3H/HeJ MGP_C3HHeJ_G0017213
 protein coding gene Chr10:79626252-79630214 (+)
C57BL/6NJ MGP_C57BL6NJ_G0017844
 protein coding gene Chr10:82973893-82977855 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0015532
 protein coding gene Chr10:73642317-73646379 (+)
CAST/EiJ MGP_CASTEiJ_G0016780
 protein coding gene Chr10:79801054-79804993 (+)
CBA/J MGP_CBAJ_G0017185
 protein coding gene Chr10:86200694-86204656 (+)
DBA/2J MGP_DBA2J_G0017291
 protein coding gene Chr10:76632969-76636931 (+)
FVB/NJ MGP_FVBNJ_G0017285
 protein coding gene Chr10:75793344-75797306 (+)
LP/J MGP_LPJ_G0017362
 protein coding gene Chr10:80680883-80684845 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0017311
 protein coding gene Chr10:88178473-88182435 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0017885
 protein coding gene Chr10:79499630-79503592 (+)
PWK/PhJ MGP_PWKPhJ_G0016561
 protein coding gene Chr10:76490213-76494297 (+)
SPRET/EiJ MGP_SPRETEiJ_G0016350
 protein coding gene Chr10:78474763-78478800 (+)
WSB/EiJ MGP_WSBEiJ_G0016840
 protein coding gene Chr10:79527597-79531559 (+)



Homology
more
  • Human Ortholog
    MADCAM1, mucosal vascular addressin cell adhesion molecule 1
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    MADCAM1, mucosal vascular addressin cell adhesion molecule 1
  • Synonyms
    MACAM1
  • Links
    NCBI Gene ID: 8174
    neXtProt AC: NX_Q13477
    UniProt: Q13477

  • Chr Location
    19p13.3; chr19:489176-505343 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotypes from 1 allele in 1 genetic background
    23 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele exhibit small Peyer's patches and decreased homing of IgA-secreting plasma cells in the lamina propria.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    20
  • GO References
    8
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    736
  • Tissues
    16
  • cDNA Data
    18
  • Literature Summary
    30
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000020310 Ensembl Gene Model | MGI Sequence Detail 3979 C57BL/6J ±  kb
    transcript ENSMUST00000020554 Ensembl | MGI Sequence Detail 1436 Not Applicable  
    polypeptide ENSMUSP00000020554 Ensembl | MGI Sequence Detail 405 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 24
      Genomic 4
      cDNA 18
      Primer pair 2

      Microarray probesets 2
    Other
    Accession IDs
    less
    MGD-MRK-24464, MGI:2143785
    References
    more
    • Summaries
      All 100
      Developmental Gene Expression 30
      Gene Ontology 8
      Phenotypes 23
    • Earliest
      J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
    • Latest
      J:343753 He C, et al., Gut-licensed beta7(+) CD4(+) T cells contribute to progressive retinal ganglion cell damage in glaucoma. Sci Transl Med. 2023 Aug 2;15(707):eadg1656
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/05/2024
    MGI 6.24     		The Jackson Laboratory