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Ccl9 Gene Detail
Summary
  • Symbol
    Ccl9
  • Name
    C-C motif chemokine ligand 9
  • Synonyms
    CCF18, MIP-1 gamma, MRP-2, Scya10, Scya9
  • Feature Type
    protein coding gene
  • IDs
    MGI:104533
    NCBI Gene: 20308
  • Alliance
    gene page
  • Transcription Start Sites
    28 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:83463745-83469462 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 50.81 cM
  • Mapping Data
    6 experiments
Strain
Comparison
more
  • SNPs within 2kb
    254 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
    2
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_104533
 protein coding gene Chr11:83463743-83469462 (-)
129S1/SvImJ MGP_129S1SvImJ_G0018853
 protein coding gene Chr11:84914268-84919984 (-)
A/J MGP_AJ_G0018820
 protein coding gene Chr11:81683405-81689121 (-)
AKR/J MGP_AKRJ_G0018790
 protein coding gene Chr11:84121246-84126961 (-)
BALB/cJ MGP_BALBcJ_G0018793
 protein coding gene Chr11:82100932-82106649 (-)
C3H/HeJ MGP_C3HHeJ_G0018607
 protein coding gene Chr11:84176453-84182169 (-)
C57BL/6NJ MGP_C57BL6NJ_G0019245
 protein coding gene Chr11:87518258-87523975 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0016879
 protein coding gene Chr11:78804522-78810386 (-)
CAST/EiJ MGP_CASTEiJ_G0018162
 protein coding gene Chr11:84750251-84755964 (-)
CBA/J MGP_CBAJ_G0018578
 protein coding gene Chr11:91274469-91280185 (-)
DBA/2J MGP_DBA2J_G0018686
 protein coding gene Chr11:81283203-81288919 (-)
FVB/NJ MGP_FVBNJ_G0018675
 protein coding gene Chr11:80767008-80772725 (-)
LP/J MGP_LPJ_G0018756
 protein coding gene Chr11:85465115-85470831 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0018702
 protein coding gene Chr11:91453499-91459216 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0019285
 protein coding gene Chr11:84390124-84395841 (-)
PWK/PhJ MGP_PWKPhJ_G0017931
 protein coding gene Chr11:82041485-82047249 (-)
SPRET/EiJ MGP_SPRETEiJ_G0017723
 protein coding gene Chr11:83926285-83932046 (-)
WSB/EiJ MGP_WSBEiJ_G0018213
 protein coding gene Chr11:84252430-84258168 (-)



Homology
more
  • Human Ortholog
    CCL15, C-C motif chemokine ligand 15
  • Vertebrate Orthologs
    5
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CCL15, C-C motif chemokine ligand 15
  • Synonyms
    HCC-2, HMRP-2B, LKN-1, LKN1, MIP-1D, MIP-1 delta, MIP-5, MRP-2B, NCC-3, NCC3, SCYA15, SCYL3, SY15
  • Links
    NCBI Gene ID: 6359
    neXtProt AC: NX_Q16663
    UniProt: Q16663

  • Chr Location
    17q12; chr17:35996440-36001553 (-)  GRCh38
  • Human Ortholog
    CCL23, C-C motif chemokine ligand 23
  • Synonyms
    Ckb-8, CKb8, Ckb-8-1, CK-BETA-8, hmrp-2a, MIP-3, MIP3, MPIF-1, SCYA23
  • Links
    NCBI Gene ID: 6368
    neXtProt AC: NX_P55773
    UniProt: P55773

  • Chr Location
    17q12; chr17:36013056-36017972 (-)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    29 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    18
  • GO References
    7
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    865
  • Tissues
    71
  • cDNA Data
    55
  • Literature Summary
    10
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000019122 Ensembl Gene Model | MGI Sequence Detail 5718 C57BL/6J ±  kb
    transcript ENSMUST00000019266 Ensembl | MGI Sequence Detail 3006 Not Applicable  
    polypeptide ENSMUSP00000019266 Ensembl | MGI Sequence Detail 122 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 65
      Genomic 4
      cDNA 55
      Primer pair 6

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGD-MRK-25964, MGD-MRK-25965, MGI:104534
    References
    more
    • Summaries
      All 79
      Developmental Gene Expression 10
      Diseases 1
      Gene Ontology 7
      Phenotypes 29
    • Earliest
      J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
    • Latest
      J:358278 Yang Y, et al., Erythrocytic alpha-Synuclein and the Gut Microbiome: Kindling of the Gut-Brain Axis in Parkinson's Disease. Mov Disord. 2024 Jan;39(1):40-52
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    12/10/2024
    MGI 6.24     		The Jackson Laboratory