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Cox6c Gene Detail
Summary
  • Symbol
    Cox6c
  • Name
    cytochrome c oxidase subunit 6C
  • Feature Type
    protein coding gene
  • IDs
    MGI:104614
    NCBI Gene: 12864
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:35932122-35938392 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 14.46 cM, cytoband B3.3
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    256 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_104614
 protein coding gene Chr15:35926032-35938392 (-)
129S1/SvImJ MGP_129S1SvImJ_G0021788
 protein coding gene Chr15:34297684-34310035 (-)
A/J MGP_AJ_G0021749
 protein coding gene Chr15:33003369-33015724 (-)
AKR/J MGP_AKRJ_G0021727
 protein coding gene Chr15:33899145-33912382 (-)
BALB/cJ MGP_BALBcJ_G0021755
 protein coding gene Chr15:33006563-33018905 (-)
C3H/HeJ MGP_C3HHeJ_G0021530
 protein coding gene Chr15:33888030-33901652 (-)
C57BL/6NJ MGP_C57BL6NJ_G0022194
 protein coding gene Chr15:35591937-35604292 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0019732
 protein coding gene Chr15:30847916-30863378 (-)
CAST/EiJ MGP_CASTEiJ_G0021046
 protein coding gene Chr15:34290999-34305051 (-)
CBA/J MGP_CBAJ_G0021499
 protein coding gene Chr15:36734111-36747413 (-)
DBA/2J MGP_DBA2J_G0021623
 protein coding gene Chr15:32815923-32828277 (-)
FVB/NJ MGP_FVBNJ_G0021601
 protein coding gene Chr15:32226393-32238740 (-)
LP/J MGP_LPJ_G0021692
 protein coding gene Chr15:34200336-34212687 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0021626
 protein coding gene Chr15:39847040-39859396 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0022217
 protein coding gene Chr15:34057303-34072858 (-)
PWK/PhJ MGP_PWKPhJ_G0020790
 protein coding gene Chr15:32837429-32849903 (-)
SPRET/EiJ MGP_SPRETEiJ_G0020628
 protein coding gene Chr15:33771127-33783460 (-)
WSB/EiJ MGP_WSBEiJ_G0021102
 protein coding gene Chr15:34046929-34059282 (-)



Homology
more
  • Human Ortholog
    COX6C, cytochrome c oxidase subunit 6C
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    COX6C, cytochrome c oxidase subunit 6C
  • Links
    NCBI Gene ID: 1345
    neXtProt AC: NX_P09669
    UniProt: P09669

  • Chr Location
    8q22.2; chr8:99873200-99893707 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    12 phenotype references
  • All Mutations and Alleles
    35
  • Chemically induced (other)
    2
  • Endonuclease-mediated
    3
  • Gene trapped
    28
  • Targeted
    2
  • Genomic Mutations
    2 involving Cox6c
  • Find Mice (IMSR)
    11 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    8
  • GO References
    6
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    800
  • Tissues
    94
  • cDNA Data
    10
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 12864 NCBI Gene Model | MGI Sequence Detail 6271 C57BL/6J ±  kb
transcript NM_053071 RefSeq | MGI Sequence Detail 527 C57BL/6  
polypeptide Q9CPQ1 UniProt | EBI | MGI Sequence Detail 76 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 10
    cDNA 10

    Microarray probesets 6
Other
Accession IDs
less
MGD-MRK-26051
References
more
  • Summaries
    All 40
    Developmental Gene Expression 2
    Gene Ontology 6
    Phenotypes 12
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:355679 Vercellino I, et al., SCAF1 drives the compositional diversity of mammalian respirasomes. Nat Struct Mol Biol. 2024 Jul;31(7):1061-1071
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory