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Aff3 Gene Detail
Summary
  • Symbol
    Aff3
  • Name
    AF4/FMR2 family, member 3
  • Synonyms
    3222402O04Rik, Laf4, LAF-4
  • Feature Type
    protein coding gene
  • IDs
    MGI:106927
    NCBI Gene: 16764
  • Alliance
    gene page
  • Transcription Start Sites
    19 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:38216407-38704036 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 16.58 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    14135 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_106927
 protein coding gene Chr1:38212936-38704036 (-)
129S1/SvImJ MGP_129S1SvImJ_G0015950
 protein coding gene Chr1:36843514-37339104 (-)
A/J MGP_AJ_G0015934
 protein coding gene Chr1:35833839-36330266 (-)
AKR/J MGP_AKRJ_G0015889
 protein coding gene Chr1:36323687-36819557 (-)
BALB/cJ MGP_BALBcJ_G0015888
 protein coding gene Chr1:35484445-35972576 (-)
C3H/HeJ MGP_C3HHeJ_G0015721
 protein coding gene Chr1:36550505-37057475 (-)
C57BL/6NJ MGP_C57BL6NJ_G0016341
 protein coding gene Chr1:38436160-38947418 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0014063
 protein coding gene Chr1:32806875-33287377 (-)
CAST/EiJ MGP_CASTEiJ_G0015302
 protein coding gene Chr1:36411384-36932001 (-)
CBA/J MGP_CBAJ_G0015693
 protein coding gene Chr1:39495674-40017966 (-)
DBA/2J MGP_DBA2J_G0015794
 protein coding gene Chr1:35129940-35621790 (-)
FVB/NJ MGP_FVBNJ_G0015796
 protein coding gene Chr1:34658712-35145850 (-)
LP/J MGP_LPJ_G0015864
 protein coding gene Chr1:37191027-37692531 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0015816
 protein coding gene Chr1:41642733-42157410 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0016388
 protein coding gene Chr1:36395288-36899188 (-)
PWK/PhJ MGP_PWKPhJ_G0015085
 protein coding gene Chr1:34919373-35410948 (-)
SPRET/EiJ MGP_SPRETEiJ_G0014867
 protein coding gene Chr1:36345326-36834801 (-)
WSB/EiJ MGP_WSBEiJ_G0015364
 protein coding gene Chr1:36356852-36865255 (-)



Homology
more
  • Human Ortholog
    AFF3, ALF transcription elongation factor 3
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    AFF3, ALF transcription elongation factor 3
  • Synonyms
    KINS, LAF4, MLLT2-like
  • Links
    NCBI Gene ID: 3899
    neXtProt AC: NX_P51826
    UniProt: P51826

  • Chr Location
    2q11.2; chr2:99545419-100192428 (-)  GRCh38
Human Diseases
more
  • Diseases
    1 with Aff3 mouse models; 1 with human AFF3 associations

Human Disease Mouse Models
      
IDs
 View 1 model
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    1 with disease annotations
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    24 phenotypes from 3 alleles in 4 genetic backgrounds
    19 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a humanized allele exhibit decreased fetal size, intestine prolapse, polydactyly, and abnormal long bones.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    20
  • GO References
    7
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    1008
  • Tissues
    259
  • cDNA Data
    73
  • Literature Summary
    15
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000037138 Ensembl Gene Model | MGI Sequence Detail 487630 C57BL/6J ±  kb
    transcript ENSMUST00000238906 Ensembl | MGI Sequence Detail 5948 Not Applicable  
    polypeptide ENSMUSP00000159147 Ensembl | MGI Sequence Detail 1254 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 78
      Genomic 1
      cDNA 74
      Primer pair 2
      Other 1

      Microarray probesets 2
    Other
    Accession IDs
    less
    MGD-MRK-35388, MGI:1918018
    References
    more
    • Summaries
      All 57
      Developmental Gene Expression 15
      Diseases 1
      Gene Ontology 7
      Phenotypes 19
    • Earliest
      J:30625 Ma C, et al., LAF-4 encodes a lymphoid nuclear protein with transactivation potential that is homologous to AF-4, the gene fused to MLL in t(4;11) leukemias. Blood. 1996 Jan 15;87(2):734-45
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/19/2024
    MGI 6.24     		The Jackson Laboratory