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Cab39 Gene Detail
Summary
  • Symbol
    Cab39
  • Name
    calcium binding protein 39
  • Synonyms
    39kDa, MO25alpha
  • Feature Type
    protein coding gene
  • IDs
    MGI:107438
    NCBI Gene: 12283
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:85721162-85779297 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 43.94 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1041 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_107438
 protein coding gene Chr1:85707796-85779298 (+)
129S1/SvImJ MGP_129S1SvImJ_G0016235
 protein coding gene Chr1:87003532-87063582 (+)
A/J MGP_AJ_G0016216
 protein coding gene Chr1:83784680-83843591 (+)
AKR/J MGP_AKRJ_G0016177
 protein coding gene Chr1:86211304-86272222 (+)
BALB/cJ MGP_BALBcJ_G0016173
 protein coding gene Chr1:83910485-83968845 (+)
C3H/HeJ MGP_C3HHeJ_G0016001
 protein coding gene Chr1:86473674-86534298 (+)
C57BL/6NJ MGP_C57BL6NJ_G0016629
 protein coding gene Chr1:90308194-90368683 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014351
 protein coding gene Chr1:78262204-78322059 (+)
CAST/EiJ MGP_CASTEiJ_G0015586
 protein coding gene Chr1:85701140-85763711 (+)
CBA/J MGP_CBAJ_G0015977
 protein coding gene Chr1:93129849-93188234 (+)
DBA/2J MGP_DBA2J_G0016079
 protein coding gene Chr1:83102577-83160444 (+)
FVB/NJ MGP_FVBNJ_G0016079
 protein coding gene Chr1:82147350-82205283 (+)
LP/J MGP_LPJ_G0016151
 protein coding gene Chr1:88110050-88171366 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0016105
 protein coding gene Chr1:96422337-96483752 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0016672
 protein coding gene Chr1:86332797-86394218 (+)
PWK/PhJ MGP_PWKPhJ_G0015373
 protein coding gene Chr1:82384506-82443048 (+)
SPRET/EiJ MGP_SPRETEiJ_G0015153
 protein coding gene Chr1:85302612-85367869 (+)
WSB/EiJ MGP_WSBEiJ_G0015650
 protein coding gene Chr1:85994718-86055438 (+)



Homology
more
  • Human Ortholog
    CAB39, calcium binding protein 39
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CAB39, calcium binding protein 39
  • Synonyms
    CGI-66, MO25
  • Links
    NCBI Gene ID: 51719
    neXtProt AC: NX_Q9Y376
    UniProt: Q9Y376

  • Chr Location
    2q37.1; chr2:230712842-230821075 (+)  GRCh38
Human Diseases
more
  • Diseases
    1 with human CAB39 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    12 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    25
  • GO References
    7
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    761
  • Tissues
    19
  • cDNA Data
    272
  • Literature Summary
    4
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000036707 Ensembl Gene Model | MGI Sequence Detail 58136 C57BL/6J ±  kb
transcript ENSMUST00000097666 Ensembl | MGI Sequence Detail 2369 Not Applicable  
polypeptide ENSMUSP00000095270 Ensembl | MGI Sequence Detail 341 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 273
    cDNA 272
    Primer pair 1

    Microarray probesets 4
Other
Accession IDs
less
MGD-MRK-35909, MGI:2138087, MGI:2138141, MGI:2138670
References
more
  • Summaries
    All 44
    Developmental Gene Expression 4
    Gene Ontology 7
    Phenotypes 12
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory