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Rgn Gene Detail
Summary
  • Symbol
    Rgn
  • Name
    regucalcin
  • Synonyms
    SMP30
  • Feature Type
    protein coding gene
  • IDs
    MGI:108024
    NCBI Gene: 19733
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
  • Candidate for QTL
    2 QTL
Location &
Maps
more
  • Sequence Map
    ChrX:20416026-20428328 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 16.04 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    244 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_108024
 protein coding gene ChrX:20413980-20428328 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035591
 protein coding gene ChrX:15444108-15456469 (+)
A/J MGP_AJ_G0035568
 protein coding gene ChrX:15528967-15541215 (+)
AKR/J MGP_AKRJ_G0035501
 protein coding gene ChrX:16046365-16058658 (+)
BALB/cJ MGP_BALBcJ_G0035561
 protein coding gene ChrX:15283176-15295497 (+)
C3H/HeJ MGP_C3HHeJ_G0035279
 protein coding gene ChrX:15648699-15661083 (+)
C57BL/6NJ MGP_C57BL6NJ_G0036097
 protein coding gene ChrX:15838979-15852134 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032961
 protein coding gene ChrX:13768594-13780517 (+)
CAST/EiJ MGP_CASTEiJ_G0034570
 protein coding gene ChrX:14957951-14970291 (+)
CBA/J MGP_CBAJ_G0035248
 protein coding gene ChrX:16567952-16580646 (+)
DBA/2J MGP_DBA2J_G0035400
 protein coding gene ChrX:15331766-15344108 (+)
FVB/NJ MGP_FVBNJ_G0035346
 protein coding gene ChrX:15232573-15244767 (+)
LP/J MGP_LPJ_G0035482
 protein coding gene ChrX:15684751-15697054 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035390
 protein coding gene ChrX:16827044-16840315 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0036104
 protein coding gene ChrX:15356452-15368761 (+)
PWK/PhJ MGP_PWKPhJ_G0034271
 protein coding gene ChrX:14521115-14533626 (+)
SPRET/EiJ MGP_SPRETEiJ_G0034111
 protein coding gene ChrX:15332758-15346232 (+)
WSB/EiJ MGP_WSBEiJ_G0034705
 protein coding gene ChrX:15223884-15235855 (+)



Homology
more
  • Human Ortholog
    RGN, regucalcin
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RGN, regucalcin
  • Synonyms
    GNL, HEL-S-41, RC, SMP30
  • Links
    NCBI Gene ID: 9104
    neXtProt AC: NX_Q15493
    UniProt: Q15493

  • Chr Location
    Xp11.3; chrX:47078355-47093314 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    34 phenotypes from 1 allele in 2 genetic backgrounds
    1 images
    35 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a disruption in this gene show increased levels of apoptosis.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    53
  • GO References
    9
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    859
  • Tissues
    98
  • cDNA Data
    66
  • Literature Summary
    6
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000023070 Ensembl Gene Model | MGI Sequence Detail 12303 C57BL/6J ±  kb
    transcript ENSMUST00000023832 Ensembl | MGI Sequence Detail 1607 Not Applicable  
    polypeptide ENSMUSP00000023832 Ensembl | MGI Sequence Detail 299 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 69
      Genomic 2
      cDNA 66
      Primer pair 1

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGD-MRK-37060, MGI:2147859
    References
    more
    • Summaries
      All 73
      Developmental Gene Expression 6
      Gene Ontology 9
      Phenotypes 35
    • Earliest
      J:29413 Fujita T, et al., Isolation of cDNA clone encoding human homologue of senescence marker protein-30 (SMP30) and its location on the X chromosome. Biochim Biophys Acta. 1995 Sep 19;1263(3):249-52
    • Latest
      J:332205 Lee B, et al., SMP30-mediated synthesis of vitamin C activates the liver PPARalpha/FGF21 axis to regulate thermogenesis in mice. Exp Mol Med. 2022 Nov;54(11):2036-2046
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/19/2024
    MGI 6.24     		The Jackson Laboratory