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Ctr9 Gene Detail
Summary
  • Symbol
    Ctr9
  • Name
    CTR9 homolog, Paf1/RNA polymerase II complex component
  • Synonyms
    Sh2bp1, Tsbp, Tsp
  • Feature Type
    protein coding gene
  • IDs
    MGI:109345
    NCBI Gene: 22083
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:110628158-110655584 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 57.98 cM
  • Mapping Data
    6 experiments
Strain
Comparison
more
  • SNPs within 2kb
    599 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_109345
 protein coding gene Chr7:110628158-110655584 (+)
129S1/SvImJ MGP_129S1SvImJ_G0032863
 protein coding gene Chr7:114536798-114564188 (+)
A/J MGP_AJ_G0032846
 protein coding gene Chr7:111699796-111727311 (+)
AKR/J MGP_AKRJ_G0032778
 protein coding gene Chr7:114514109-114541363 (+)
BALB/cJ MGP_BALBcJ_G0032851
 protein coding gene Chr7:111388279-111415680 (+)
C3H/HeJ MGP_C3HHeJ_G0032561
 protein coding gene Chr7:114502668-114531202 (+)
C57BL/6NJ MGP_C57BL6NJ_G0033357
 protein coding gene Chr7:119269884-119299697 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0030329
 protein coding gene Chr7:113309646-113340600 (+)
CAST/EiJ MGP_CASTEiJ_G0031889
 protein coding gene Chr7:106088791-106120813 (+)
CBA/J MGP_CBAJ_G0032534
 protein coding gene Chr7:123169198-123198722 (+)
DBA/2J MGP_DBA2J_G0032686
 protein coding gene Chr7:109796765-109824414 (+)
FVB/NJ MGP_FVBNJ_G0032639
 protein coding gene Chr7:109645521-109672872 (+)
LP/J MGP_LPJ_G0032780
 protein coding gene Chr7:116047427-116075192 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0032671
 protein coding gene Chr7:124819349-124848465 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0033377
 protein coding gene Chr7:113518227-113547019 (+)
PWK/PhJ MGP_PWKPhJ_G0031596
 protein coding gene Chr7:102625844-102654520 (+)
SPRET/EiJ MGP_SPRETEiJ_G0031444
 protein coding gene Chr7:100264501-100291588 (+)
WSB/EiJ MGP_WSBEiJ_G0032002
 protein coding gene Chr7:114371458-114401835 (+)



Homology
more
  • Human Ortholog
    CTR9, CTR9 homolog, Paf1/RNA polymerase II complex component
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CTR9, CTR9 homolog, Paf1/RNA polymerase II complex component
  • Synonyms
    p150, p150TSP, SH2BP1, TSBP
  • Links
    NCBI Gene ID: 9646
    neXtProt AC: NX_Q6PD62
    UniProt: Q6PD62

  • Chr Location
    11p15.4; chr11:10751018-10801625 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 1 allele in 1 genetic background
    18 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    34
  • GO References
    13
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    714
  • Tissues
    7
  • cDNA Data
    145
  • Literature Summary
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 22083 NCBI Gene Model | MGI Sequence Detail 27427 C57BL/6J ±  kb
    transcript NM_009431 RefSeq | MGI Sequence Detail 4317 ZRU/MplStud  
    polypeptide Q62018 UniProt | EBI | MGI Sequence Detail 1173 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 146
      cDNA 146

      Microarray probesets 7
    Other
    Accession IDs
    less
    MGD-MRK-33783, MGD-MRK-38390, MGI:2141821
    References
    more
    • Summaries
      All 56
      Developmental Gene Expression 2
      Gene Ontology 13
      Phenotypes 18
    • Earliest
      J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory