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Kif1c Gene Detail
Summary
  • Symbol
    Kif1c
  • Name
    kinesin family member 1C
  • Synonyms
    B430105J22Rik, D11Bwg1349e, N-3 kinsin, Orch3
  • Feature Type
    protein coding gene
  • IDs
    MGI:1098260
    NCBI Gene: 16562
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:70591374-70622790 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 43.21 cM
  • Mapping Data
    10 experiments
Strain
Comparison
more
  • SNPs within 2kb
    285 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1098260
 protein coding gene Chr11:70591170-70622796 (+)
129S1/SvImJ MGP_129S1SvImJ_G0018614
 protein coding gene Chr11:71251294-71285692 (+)
A/J MGP_AJ_G0018582
 protein coding gene Chr11:68557567-68588926 (+)
AKR/J MGP_AKRJ_G0018551
 protein coding gene Chr11:70613427-70644532 (+)
BALB/cJ MGP_BALBcJ_G0018554
 protein coding gene Chr11:68864713-68896328 (+)
C3H/HeJ MGP_C3HHeJ_G0018367
 protein coding gene Chr11:70634843-70667424 (+)
C57BL/6NJ MGP_C57BL6NJ_G0019005
 protein coding gene Chr11:73406795-73441849 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0016650
 protein coding gene Chr11:65461329-65493736 (+)
CAST/EiJ MGP_CASTEiJ_G0017922
 protein coding gene Chr11:70906080-70939310 (+)
CBA/J MGP_CBAJ_G0018339
 protein coding gene Chr11:76711499-76746044 (+)
DBA/2J MGP_DBA2J_G0018449
 protein coding gene Chr11:68128188-68160121 (+)
FVB/NJ MGP_FVBNJ_G0018439
 protein coding gene Chr11:67769930-67805481 (+)
LP/J MGP_LPJ_G0018519
 protein coding gene Chr11:71828170-71861707 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0018462
 protein coding gene Chr11:77261045-77298737 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0019047
 protein coding gene Chr11:70872451-70903208 (+)
PWK/PhJ MGP_PWKPhJ_G0017696
 protein coding gene Chr11:68775899-68951831 (+)
SPRET/EiJ MGP_SPRETEiJ_G0017486
 protein coding gene Chr11:70689120-70722328 (+)
WSB/EiJ MGP_WSBEiJ_G0017976
 protein coding gene Chr11:70533555-70569297 (+)



Homology
more
  • Human Ortholog
    KIF1C, kinesin family member 1C
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    KIF1C, kinesin family member 1C
  • Synonyms
    LTXS1, SATX2, SAX2, SPAX2, SPG58
  • Links
    NCBI Gene ID: 10749
    neXtProt AC: NX_O43896
    UniProt: O43896

  • Chr Location
    17p13.2; chr17:4997950-5028401 (+)  GRCh38
Human Diseases
more
  • Diseases
    1 with human KIF1C associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotypes from 5 alleles in 4 genetic backgrounds
    1 phenotype from multigenic genotypes
    17 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a reporter allele are viable, fertile and overtly normal and display normal motor-dependent retrograde Golgi apparatus-to-endoplasmic reticulum transport.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    19
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    754
  • Tissues
    12
  • cDNA Data
    107
  • Literature Summary
    4
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000020821 Ensembl Gene Model | MGI Sequence Detail 31417 C57BL/6J ±  kb
    transcript ENSMUST00000072187 Ensembl | MGI Sequence Detail 5046 Not Applicable  
    polypeptide ENSMUSP00000072048 Ensembl | MGI Sequence Detail 1112 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 109
      cDNA 107
      Primer pair 2

      Microarray probesets 6
    Other
    Accession IDs
    less
    MGD-MRK-36568, MGI:106361, MGI:107988, MGI:1335095, MGI:2443544
    References
    more
    • Summaries
      All 53
      Developmental Gene Expression 4
      Gene Ontology 5
      Phenotypes 17
    • Earliest
      J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
    • Latest
      J:313619 Bedogni F, et al., Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Front Mol Neurosci. 2021;14:686034
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/05/2024
    MGI 6.24     		The Jackson Laboratory