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Ss18l2 Gene Detail
Summary
  • Symbol
    Ss18l2
  • Name
    SS18, nBAF chromatin remodeling complex subunit like 2
  • Synonyms
    1110020I04Rik, Band 47B, Deb1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1349474
    NCBI Gene: 26901
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:121539455-121541987 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 72.56 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    149 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1349474
 protein coding gene Chr9:121539395-121542454 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035446
 protein coding gene Chr9:124661432-124663964 (+)
A/J MGP_AJ_G0035427
 protein coding gene Chr9:119916515-119919047 (+)
AKR/J MGP_AKRJ_G0035360
 protein coding gene Chr9:123111155-123113694 (+)
BALB/cJ MGP_BALBcJ_G0035423
 protein coding gene Chr9:119824546-119827078 (+)
C3H/HeJ MGP_C3HHeJ_G0035130
 protein coding gene Chr9:123569105-123571637 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035946
 protein coding gene Chr9:128075611-128078143 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032828
 protein coding gene Chr9:117079168-117081717 (+)
CAST/EiJ MGP_CASTEiJ_G0034435
 protein coding gene Chr9:123606091-123608625 (+)
CBA/J MGP_CBAJ_G0035098
 protein coding gene Chr9:132766476-132769015 (+)
DBA/2J MGP_DBA2J_G0035257
 protein coding gene Chr9:119356815-119359354 (+)
FVB/NJ MGP_FVBNJ_G0035204
 protein coding gene Chr9:118277030-118279562 (+)
LP/J MGP_LPJ_G0035336
 protein coding gene Chr9:125007461-125009993 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035245
 protein coding gene Chr9:133703665-133706197 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035965
 protein coding gene Chr9:123552580-123555112 (+)
PWK/PhJ MGP_PWKPhJ_G0034139
 protein coding gene Chr9:119819162-119821806 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033976
 protein coding gene Chr9:123667496-123670032 (+)
WSB/EiJ MGP_WSBEiJ_G0034555
 protein coding gene Chr9:123403431-123405969 (+)



Homology
more
  • Human Ortholog
    SS18L2, SS18 like 2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SS18L2, SS18 like 2
  • Synonyms
    KIAA-iso
  • Links
    NCBI Gene ID: 51188
    neXtProt AC: NX_Q9UHA2
    UniProt: Q9UHA2

  • Chr Location
    3p22.1; chr3:42581840-42596934 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

Cellular Component
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    807
  • Tissues
    18
  • cDNA Data
    6
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 26901 NCBI Gene Model | MGI Sequence Detail 2533 C57BL/6J ±  kb
transcript NM_026794 RefSeq | MGI Sequence Detail 588 Not Specified  
polypeptide Q9D174 UniProt | EBI | MGI Sequence Detail 77 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 9
    cDNA 9

    Microarray probesets 3
Other
Accession IDs
less
MGI:1915883, MGI:2143067
References
more
  • Summaries
    All 25
    Developmental Gene Expression 2
    Phenotypes 2
  • Earliest
    J:9590 Takahashi M, et al., Chromosomal mapping of the mouse IL-4 and human IL-5 genes. Genomics. 1989 Jan;4(1):47-52
  • Latest
    J:314576 Narayanan R, et al., Loss of BAF (mSWI/SNF) Complexes Causes Global Transcriptional and Chromatin State Changes in Forebrain Development. Cell Rep. 2015 Dec 1;13(9):1842-54
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory