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Rab9 Gene Detail
Summary
  • Symbol
    Rab9
  • Name
    RAB9, member RAS oncogene family
  • Synonyms
    2410064E05Rik, SID 99
  • Feature Type
    protein coding gene
  • IDs
    MGI:1890695
    NCBI Gene: 56382
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
  • Candidate for QTL
    2 QTL
Location &
Maps
more
  • Sequence Map
    ChrX:165240249-165262863 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 77.47 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    501 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1890695
 protein coding gene ChrX:165240247-165262863 (-)
129S1/SvImJ no annotation
A/J MGP_AJ_G0036235
 protein coding gene ChrX:163735514-163757987 (-)
AKR/J MGP_AKRJ_G0036165
 protein coding gene ChrX:168993424-169018461 (-)
BALB/cJ MGP_BALBcJ_G0036230
 protein coding gene ChrX:161727227-161750361 (-)
C3H/HeJ MGP_C3HHeJ_G0035937
 protein coding gene ChrX:164902272-164923863 (-)
C57BL/6NJ MGP_C57BL6NJ_G0036753
 protein coding gene ChrX:169385494-169408279 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0033573
 protein coding gene ChrX:154603759-154625377 (-)
CAST/EiJ MGP_CASTEiJ_G0035224
 protein coding gene ChrX:143782872-143808985 (-)
CBA/J MGP_CBAJ_G0035911
 protein coding gene ChrX:174327366-174350633 (-)
DBA/2J MGP_DBA2J_G0036077
 protein coding gene ChrX:162569406-162591258 (-)
FVB/NJ MGP_FVBNJ_G0036009
 protein coding gene ChrX:161691858-161715101 (-)
LP/J MGP_LPJ_G0036162
 protein coding gene ChrX:165709093-165735911 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0036041
 protein coding gene ChrX:183041241-183064614 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0036792
 protein coding gene ChrX:164072656-164095140 (-)
PWK/PhJ MGP_PWKPhJ_G0034923
 protein coding gene ChrX:140535423-140557694 (-)
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0035360
 protein coding gene ChrX:161903843-161927640 (-)



Homology
more
  • Human Ortholog
    RAB9A, RAB9A, member RAS oncogene family
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RAB9A, RAB9A, member RAS oncogene family
  • Synonyms
    RAB9
  • Links
    NCBI Gene ID: 9367
    neXtProt AC: NX_P51151
    UniProt: P51151

  • Chr Location
    Xp22.2; chrX:13689128-13710504 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    2 images
    11 phenotype references
Male chimeras hemizygous for a gene trapped allele appear normal at E9.5.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    30
  • GO References
    10
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    60
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000079316 Ensembl Gene Model | MGI Sequence Detail 22615 C57BL/6J ±  kb
transcript ENSMUST00000049435 Ensembl | MGI Sequence Detail 876 Not Applicable  
polypeptide ENSMUSP00000045127 Ensembl | MGI Sequence Detail 202 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 60
    cDNA 60

    Microarray probesets 3
Other
Accession IDs
less
MGI:1914627, MGI:2147853
References
more
  • Summaries
    All 44
    Gene Ontology 10
    Phenotypes 11
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory