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Ubn1 Gene Detail
Summary
  • Symbol
    Ubn1
  • Name
    ubinuclein 1
  • Synonyms
    1110029L11Rik, 2610108L02Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1891307
    NCBI Gene: 170644
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:4867921-4904153 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 16, 2.49 cM
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    615 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1891307
 protein coding gene Chr16:4867921-4904153 (+)
129S1/SvImJ MGP_129S1SvImJ_G0022483
 protein coding gene Chr16:1579772-1619053 (+)
A/J MGP_AJ_G0022445
 protein coding gene Chr16:1384971-1421868 (+)
AKR/J MGP_AKRJ_G0022422
 protein coding gene Chr16:1584178-1619402 (+)
BALB/cJ MGP_BALBcJ_G0022450
 protein coding gene Chr16:1538380-1574292 (+)
C3H/HeJ MGP_C3HHeJ_G0022217
 protein coding gene Chr16:1605174-1642158 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022899
 protein coding gene Chr16:1663967-1701893 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0020420
 protein coding gene Chr16:1318358-1356062 (+)
CAST/EiJ MGP_CASTEiJ_G0021743
 protein coding gene Chr16:1607466-1646481 (+)
CBA/J MGP_CBAJ_G0022186
 protein coding gene Chr16:1761166-1799609 (+)
DBA/2J MGP_DBA2J_G0022317
 protein coding gene Chr16:1486174-1521505 (+)
FVB/NJ MGP_FVBNJ_G0022292
 protein coding gene Chr16:1480979-1517971 (+)
LP/J MGP_LPJ_G0022385
 protein coding gene Chr16:1572591-1611350 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0022314
 protein coding gene Chr16:1596125-1641415 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0022911
 protein coding gene Chr16:1553760-1589607 (+)
PWK/PhJ MGP_PWKPhJ_G0021483
 protein coding gene Chr16:1562610-1599976 (+)
SPRET/EiJ MGP_SPRETEiJ_G0021314
 protein coding gene Chr16:1640216-1680369 (+)
WSB/EiJ MGP_WSBEiJ_G0021792
 protein coding gene Chr16:1570983-1616264 (+)



Homology
more
  • Human Ortholog
    UBN1, ubinuclein 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    UBN1, ubinuclein 1
  • Synonyms
    VT, VT4
  • Links
    NCBI Gene ID: 29855
    neXtProt AC: NX_Q9NPG3
    UniProt: Q9NPG3

  • Chr Location
    16p13.3; chr16:4846665-4882401 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 1 allele in 1 genetic background
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    14
  • GO References
    7
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    709
  • Tissues
    3
  • cDNA Data
    168
  • Literature Summary
    1
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 170644 NCBI Gene Model | MGI Sequence Detail 36233 C57BL/6J ±  kb
    transcript NM_026666 RefSeq | MGI Sequence Detail 6470 ZRU/MplStud  
    polypeptide Q4G0F8 UniProt | EBI | MGI Sequence Detail 1135 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 168
      cDNA 168

      Microarray probesets 5
    Other
    Accession IDs
    less
    MGI:1915552, MGI:1915969, MGI:2146362, MGI:2146625
    References
    more
    • Summaries
      All 38
      Developmental Gene Expression 1
      Gene Ontology 7
      Phenotypes 7
    • Earliest
      J:74234 Aho S, et al., Ubinuclein, a novel nuclear protein interacting with cellular and viral transcription factors. J Cell Biol. 2000 Mar 20;148(6):1165-76
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    12/10/2024
    MGI 6.24     		The Jackson Laboratory