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Trappc2b Gene Detail
Summary
  • Symbol
    Trappc2b
  • Name
    trafficking protein particle complex 2B
  • Synonyms
    0610009B22Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913300
    NCBI Gene: 66050
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:51576213-51579701 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 31.26 cM, cytoband B1.3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    148 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913300
 protein coding gene Chr11:51576207-51579929 (-)
129S1/SvImJ MGP_129S1SvImJ_G0018274
 protein coding gene Chr11:50939406-50942881 (-)
A/J MGP_AJ_G0018243
 protein coding gene Chr11:49019741-49023229 (-)
AKR/J MGP_AKRJ_G0018213
 protein coding gene Chr11:50556338-50559831 (-)
BALB/cJ MGP_BALBcJ_G0018214
 protein coding gene Chr11:49312255-49315745 (-)
C3H/HeJ MGP_C3HHeJ_G0018025
 protein coding gene Chr11:50595131-50598608 (-)
C57BL/6NJ MGP_C57BL6NJ_G0018664
 protein coding gene Chr11:52483841-52487333 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0016316
 protein coding gene Chr11:46579906-46583296 (-)
CAST/EiJ MGP_CASTEiJ_G0017589
 protein coding gene Chr11:50583615-50587085 (-)
CBA/J MGP_CBAJ_G0018000
 protein coding gene Chr11:54939134-54942618 (-)
DBA/2J MGP_DBA2J_G0018107
 protein coding gene Chr11:48726158-48729643 (-)
FVB/NJ MGP_FVBNJ_G0018102
 protein coding gene Chr11:48442796-48446284 (-)
LP/J MGP_LPJ_G0018183
 protein coding gene Chr11:51359069-51362549 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0018125
 protein coding gene Chr11:56348692-56352192 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0018707
 protein coding gene Chr11:50659860-50663350 (-)
PWK/PhJ MGP_PWKPhJ_G0017365
 protein coding gene Chr11:49245194-49248683 (-)
SPRET/EiJ MGP_SPRETEiJ_G0017160
 protein coding gene Chr11:50393845-50397324 (-)
WSB/EiJ MGP_WSBEiJ_G0017637
 protein coding gene Chr11:50304699-50308193 (-)



Homology
more
  • Human Ortholog
    TRAPPC2, trafficking protein particle complex subunit 2
  • Vertebrate Orthologs
    5
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAPPC2, trafficking protein particle complex subunit 2
  • Synonyms
    hYP38334, MIP2A, SEDL, SEDT, TRAPPC2P1, TRS20, ZNF547L
  • Links
    NCBI Gene ID: 6399
    neXtProt AC: NX_P0DI81, NX_P0DI82
    UniProt: P0DI81

  • Chr Location
    Xp22.2; chrX:13712244-13734635 (-)  GRCh38
  • Human Ortholog
    TRAPPC2B, trafficking protein particle complex subunit 2B
  • Synonyms
    MIP-2A, MIP2A, SEDLP, SEDLP1, TRAPPC2P1
  • Links
    NCBI Gene ID: 10597
    UniProt: P0DI82

  • Chr Location
    19q13.43; chr19:57363551-57365405 (+)  GRCh38
Human Diseases
more
  • Diseases
    1 with human TRAPPC2 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    13 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    17
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    752
  • Tissues
    32
  • cDNA Data
    52
  • Literature Summary
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000007777 Ensembl Gene Model | MGI Sequence Detail 3489 C57BL/6J ±  kb
    transcript ENSMUST00000007921 Ensembl | MGI Sequence Detail 813 Not Applicable  
    polypeptide ENSMUSP00000007921 Ensembl | MGI Sequence Detail 140 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      1 Sequence
    Molecular
    Reagents
    less
    • All nucleic 52
      cDNA 52

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:7461651
    References
    more
    • Summaries
      All 33
      Developmental Gene Expression 2
      Gene Ontology 2
      Phenotypes 13
    • Earliest
      J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory