About   Help   FAQ
Sec61b Gene Detail
Summary
  • Symbol
    Sec61b
  • Name
    SEC61 translocon subunit beta
  • Synonyms
    1190006C12Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913462
    NCBI Gene: 66212
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:47474661-47483233 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 26.03 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    360 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913462
 protein coding gene Chr4:47474658-47483242 (+)
129S1/SvImJ MGP_129S1SvImJ_G0028269
 protein coding gene Chr4:45858545-45867182 (+)
A/J MGP_AJ_G0028228
 protein coding gene Chr4:44132310-44140868 (+)
AKR/J MGP_AKRJ_G0028178
 protein coding gene Chr4:45246182-45254732 (+)
BALB/cJ MGP_BALBcJ_G0028248
 protein coding gene Chr4:44256046-44264553 (+)
C3H/HeJ MGP_C3HHeJ_G0027969
 protein coding gene Chr4:45846289-45854815 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028689
 protein coding gene Chr4:47546207-47555025 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0025998
 protein coding gene Chr4:41509818-41519015 (+)
CAST/EiJ MGP_CASTEiJ_G0027408
 protein coding gene Chr4:45428876-45437677 (+)
CBA/J MGP_CBAJ_G0027935
 protein coding gene Chr4:49057437-49066061 (+)
DBA/2J MGP_DBA2J_G0028085
 protein coding gene Chr4:44037952-44046539 (+)
FVB/NJ MGP_FVBNJ_G0028052
 protein coding gene Chr4:43306287-43314862 (+)
LP/J MGP_LPJ_G0028184
 protein coding gene Chr4:45913413-45921939 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028076
 protein coding gene Chr4:52088040-52096613 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028724
 protein coding gene Chr4:45474150-45482726 (+)
PWK/PhJ MGP_PWKPhJ_G0027133
 protein coding gene Chr4:44149471-44158074 (+)
SPRET/EiJ MGP_SPRETEiJ_G0026961
 protein coding gene Chr4:44982436-44991030 (+)
WSB/EiJ MGP_WSBEiJ_G0027486
 protein coding gene Chr4:45391100-45400358 (+)



Homology
more
  • Human Ortholog
    SEC61B, SEC61 translocon subunit beta
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SEC61B, SEC61 translocon subunit beta
  • Links
    NCBI Gene ID: 10952
    neXtProt AC: NX_P60468
    UniProt: P60468

  • Chr Location
    9q22.33; chr9:99222064-99230615 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    21
  • GO References
    11
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    708
  • Tissues
    1
  • cDNA Data
    86
  • Literature Summary
    1
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 66212 NCBI Gene Model | MGI Sequence Detail 8573 C57BL/6J ±  kb
    transcript NM_024171 RefSeq | MGI Sequence Detail 552 C57BL/6  
    polypeptide Q9CQS8 UniProt | EBI | MGI Sequence Detail 96 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      2 Sequences
    • Protein Ontology
      PR:000014597 protein transport protein Sec61 subunit beta
      (term hierarchy)
    • InterPro Domains
      IPR016482 Protein transport protein SecG/Sec61-beta/Sbh
      IPR030671 Protein transport Sec61-beta/Sbh
    • GlyGen
      Q9CQS8 1 site, 1 O-linked glycan (1 site)
    Molecular
    Reagents
    less
    • All nucleic 87
      cDNA 87

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:2145216, MGI:2145417
    References
    more
    • Summaries
      All 38
      Developmental Gene Expression 1
      Gene Ontology 11
      Phenotypes 7
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
    Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory