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Snw1 Gene Detail
Summary
  • Symbol
    Snw1
  • Name
    SNW domain containing 1
  • Synonyms
    2310008B08Rik, NCoA-62, Skiip, SKIP, SNW1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913604
    NCBI Gene: 66354
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:87496680-87519069 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 12, 41.67 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    615 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913604
 protein coding gene Chr12:87495845-87519069 (-)
129S1/SvImJ MGP_129S1SvImJ_G0019989
 protein coding gene Chr12:88367478-88391447 (-)
A/J MGP_AJ_G0019947
 protein coding gene Chr12:85003041-85026249 (-)
AKR/J MGP_AKRJ_G0019922
 protein coding gene Chr12:87305662-87327916 (-)
BALB/cJ MGP_BALBcJ_G0019926
 protein coding gene Chr12:85343623-85365871 (-)
C3H/HeJ MGP_C3HHeJ_G0019732
 protein coding gene Chr12:87797936-87820601 (-)
C57BL/6NJ MGP_C57BL6NJ_G0020378
 protein coding gene Chr12:90903934-90925937 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0017996
 protein coding gene Chr12:81885002-81907400 (-)
CAST/EiJ MGP_CASTEiJ_G0019282
 protein coding gene Chr12:82844762-82866623 (-)
CBA/J MGP_CBAJ_G0019704
 protein coding gene Chr12:94363624-94390257 (-)
DBA/2J MGP_DBA2J_G0019817
 protein coding gene Chr12:84504774-84527758 (-)
FVB/NJ MGP_FVBNJ_G0019804
 protein coding gene Chr12:83493043-83515624 (-)
LP/J MGP_LPJ_G0019891
 protein coding gene Chr12:88237073-88259921 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0019843
 protein coding gene Chr12:97144249-97166939 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0020410
 protein coding gene Chr12:86937808-86962533 (-)
PWK/PhJ MGP_PWKPhJ_G0019046
 protein coding gene Chr12:79062179-79085092 (-)
SPRET/EiJ MGP_SPRETEiJ_G0018841
 protein coding gene Chr12:81447633-81471565 (-)
WSB/EiJ MGP_WSBEiJ_G0019335
 protein coding gene Chr12:87717552-87740758 (-)



Homology
more
  • Human Ortholog
    SNW1, SNW domain containing 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SNW1, SNW domain containing 1
  • Synonyms
    Bx42, FUN20, NCOA-62, Prp45, PRPF45, SKIIP, SKIP, SKIP1
  • Links
    NCBI Gene ID: 22938
    neXtProt AC: NX_Q13573
    UniProt: Q13573

  • Chr Location
    14q24.3; chr14:77717599-77761207 (-)  GRCh38
Human Diseases
more
  • Diseases
    2 with human SNW1 associations

Human Disease Mouse Models
      
IDs
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    62
  • GO References
    8
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    976
  • Tissues
    138
  • cDNA Data
    12
  • Literature Summary
    4
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 66354 NCBI Gene Model | MGI Sequence Detail 22390 C57BL/6J ±  kb
transcript NM_025507 RefSeq | MGI Sequence Detail 2257 C57BL/6  
polypeptide Q9CSN1 UniProt | EBI | MGI Sequence Detail 536 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    5 Sequences
  • Protein Ontology
    PR:000015357 SNW domain-containing protein 1
    (term hierarchy)
  • InterPro Domains
    IPR017862 SKI-interacting protein, SKIP
    IPR004015 SKI-interacting protein SKIP, SNW domain
  • GlyGen
    Q9CSN1 2 sites, 1 N-linked glycan (1 site), 1 O-linked glycan (1 site)
Molecular
Reagents
less
  • All nucleic 14
    cDNA 12
    Primer pair 1
    Other 1

    Microarray probesets 5
Other
Accession IDs
less
MGI:2144995
References
more
  • Summaries
    All 42
    Developmental Gene Expression 4
    Gene Ontology 8
    Phenotypes 10
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:346113 Zhang D, et al., Skip is essential for Notch signaling to induce Sox2 in cerebral arteriovenous malformations. Cell Signal. 2020 Apr;68:109537
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory