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Smim27 Gene Detail
Summary
  • Symbol
    Smim27
  • Name
    small integral membrane protein 27
  • Synonyms
    2010003O02Rik, Toporsos
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913684
    NCBI Gene: 100504309
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:40269579-40270228 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 20.24 cM, cytoband A5
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    68 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913684
 protein coding gene Chr4:40269579-40270940 (+)
129S1/SvImJ MGP_129S1SvImJ_G0003885
 antisense lncRNA gene Chr4:38122606-38126591 (+)
A/J MGP_AJ_G0003865
 antisense lncRNA gene Chr4:36712658-36714004 (+)
AKR/J MGP_AKRJ_G0003842
 antisense lncRNA gene Chr4:37608152-37609544 (+)
BALB/cJ MGP_BALBcJ_G0003852
 antisense lncRNA gene Chr4:37015492-37017046 (+)
C3H/HeJ MGP_C3HHeJ_G0003797
 antisense lncRNA gene Chr4:38178253-38179610 (+)
C57BL/6NJ MGP_C57BL6NJ_G0003996
 antisense lncRNA gene Chr4:39566038-39567415 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0003493
 antisense lncRNA gene Chr4:34411902-34413419 (+)
CAST/EiJ MGP_CASTEiJ_G0003763
 antisense lncRNA gene Chr4:37848218-37849606 (+)
CBA/J MGP_CBAJ_G0003791
 antisense lncRNA gene Chr4:40897822-40899181 (+)
DBA/2J MGP_DBA2J_G0003806
 antisense lncRNA gene Chr4:36623499-36624831 (+)
FVB/NJ MGP_FVBNJ_G0003826
 antisense lncRNA gene Chr4:35972384-35973998 (+)
LP/J MGP_LPJ_G0003887
 antisense lncRNA gene Chr4:38192331-38193558 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0003814
 antisense lncRNA gene Chr4:44264430-44266663 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0003995
 antisense lncRNA gene Chr4:37729862-37731235 (+)
PWK/PhJ MGP_PWKPhJ_G0003719
 antisense lncRNA gene Chr4:36610605-36611973 (+)
SPRET/EiJ MGP_SPRETEiJ_G0003664
 antisense lncRNA gene Chr4:37468040-37469323 (+)
WSB/EiJ MGP_WSBEiJ_G0003799
 antisense lncRNA gene Chr4:37726864-37728249 (+)



Homology
more
  • Human Ortholog
    SMIM27, small integral membrane protein 27
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SMIM27, small integral membrane protein 27
  • Synonyms
    C9orf133, TOPORS-AS1
  • Links
    NCBI Gene ID: 100129250
    UniProt: A0A1B0GUW7

  • Chr Location
    9p21.1; chr9:32551144-32568621 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

Biological Process

Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    3
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 100504309 NCBI Gene Model | MGI Sequence Detail 650 C57BL/6J ±  kb
transcript NM_001349093 RefSeq | MGI Sequence Detail 351 ZRU/MplStud  
polypeptide A0A140LHV9 UniProt | EBI | MGI Sequence Detail 49 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4

    Microarray probesets 4
Other
Accession IDs
less
MGI:5908856
References
more
  • Summaries
    All 18
    Gene Ontology 1
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory