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Ly6m Gene Detail
Summary
  • Symbol
    Ly6m
  • Name
    lymphocyte antigen 6 family member M
  • Synonyms
    2010109I03Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914288
    NCBI Gene: 67038
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:74750185-74753553 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 34.29 cM, cytoband E1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    199 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914288
 protein coding gene Chr15:74748836-74768870 (-)
129S1/SvImJ MGP_129S1SvImJ_G0021944
 protein coding gene Chr15:74677660-74702921 (-)
A/J MGP_AJ_G0021901
 protein coding gene Chr15:72013997-72036768 (-)
AKR/J MGP_AKRJ_G0021885
 protein coding gene Chr15:73884269-73919287 (-)
BALB/cJ MGP_BALBcJ_G0021910
 protein coding gene Chr15:72034870-72057912 (-)
C3H/HeJ MGP_C3HHeJ_G0021683
 protein coding gene Chr15:74017430-74038328 (-)
C57BL/6NJ MGP_C57BL6NJ_G0022350
 protein coding gene Chr15:77491175-77512269 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0019885
 protein coding gene Chr15:68394844-68415819 (-)
CAST/EiJ MGP_CASTEiJ_G0021202
 protein coding gene Chr15:74834415-74855741 (-)
CBA/J MGP_CBAJ_G0021649
 protein coding gene Chr15:80046848-80072956 (-)
DBA/2J MGP_DBA2J_G0021774
 protein coding gene Chr15:71604858-71629213 (-)
FVB/NJ MGP_FVBNJ_G0021756
 protein coding gene Chr15:70643577-70645182 (-)
LP/J MGP_LPJ_G0021846
 protein coding gene Chr15:74746757-74779018 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0021779
 protein coding gene Chr15:85351265-85374798 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0022371
 protein coding gene Chr15:74250444-74272642 (-)
PWK/PhJ MGP_PWKPhJ_G0020943
 protein coding gene Chr15:71723630-71746069 (-)
SPRET/EiJ MGP_SPRETEiJ_G0020783
 protein coding gene Chr15:74104489-74128365 (-)
WSB/EiJ MGP_WSBEiJ_G0021254
 protein coding gene Chr15:74272428-74294848 (-)



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    26 phenotype references
  • All Mutations and Alleles
    7
  • Chemically induced (other)
    3
  • Endonuclease-mediated
    1
  • Gene trapped
    1
  • Radiation induced
    2
  • Genomic Mutations
    5 involving Ly6m
  • Incidental Mutations
    APF
  • Find Mice (IMSR)
    6 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    5
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    713
  • Tissues
    1
  • cDNA Data
    13
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 67038 NCBI Gene Model | MGI Sequence Detail 3369 C57BL/6J ±  kb
transcript NM_025929 RefSeq | MGI Sequence Detail 1887 C57BL/6  
polypeptide NP_080205 RefSeq | MGI Sequence Detail 111 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR016054 Ly-6 antigen/uPA receptor-like
    IPR051110 Ly-6/neurotoxin-like and GPI-anchored
    IPR045860 Snake toxin-like superfamily
    IPR035076 Snake toxin/toxin-like
Molecular
Reagents
less
  • All nucleic 13
    cDNA 13

    Microarray probesets 2
Other
Accession IDs
less
MGI:6278300
References
more
  • Summaries
    All 46
    Developmental Gene Expression 1
    Diseases 1
    Gene Ontology 1
    Phenotypes 26
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory