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Rpl39 Gene Detail
Summary
  • Symbol
    Rpl39
  • Name
    ribosomal protein L39
  • Synonyms
    2810465O16Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914498
    NCBI Gene: 67248
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:36346169-36348852 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 21.50 cM, cytoband F3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    116 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914498
 protein coding gene ChrX:36346169-36349055 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035630
 protein coding gene ChrX:32029580-32032462 (-)
A/J MGP_AJ_G0035607
 protein coding gene ChrX:32083208-32084731 (-)
AKR/J MGP_AKRJ_G0035540
 protein coding gene ChrX:32811318-32814200 (-)
BALB/cJ MGP_BALBcJ_G0035600
 protein coding gene ChrX:31817494-31820376 (-)
C3H/HeJ MGP_C3HHeJ_G0035318
 protein coding gene ChrX:32338557-32341439 (-)
C57BL/6NJ MGP_C57BL6NJ_G0036136
 protein coding gene ChrX:32662019-32664901 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032998
 protein coding gene ChrX:30300698-30303813 (-)
CAST/EiJ MGP_CASTEiJ_G0034608
 protein coding gene ChrX:20498643-20501526 (-)
CBA/J MGP_CBAJ_G0035287
 protein coding gene ChrX:33524215-33527097 (-)
DBA/2J MGP_DBA2J_G0035438
 protein coding gene ChrX:31908102-31910984 (-)
FVB/NJ MGP_FVBNJ_G0035385
 protein coding gene ChrX:31675634-31678516 (-)
LP/J MGP_LPJ_G0035520
 protein coding gene ChrX:32390993-32393875 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0035429
 protein coding gene ChrX:33972013-33974895 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0036143
 protein coding gene ChrX:31995835-31998717 (-)
PWK/PhJ MGP_PWKPhJ_G0034310
 protein coding gene ChrX:19950476-19953466 (-)
SPRET/EiJ MGP_SPRETEiJ_G0034151
 protein coding gene ChrX:20978911-20981799 (-)
WSB/EiJ MGP_WSBEiJ_G0034744
 protein coding gene ChrX:31788860-31791742 (-)



Homology
more
  • Human Ortholog
    RPL39, ribosomal protein L39
  • Vertebrate Orthologs
    9
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RPL39, ribosomal protein L39
  • Synonyms
    eL39, L39, RPL39_23_1806, RPL39P42
  • Links
    NCBI Gene ID: 6170
    neXtProt AC: NX_P62891
    UniProt: P62891

  • Chr Location
    Xq24; chrX:119786504-119791630 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    18
  • GO References
    7
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    714
  • Tissues
    4
  • cDNA Data
    315
  • Literature Summary
    3
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 67248 NCBI Gene Model | MGI Sequence Detail 2684 C57BL/6J ±  kb
transcript NM_026055 RefSeq | MGI Sequence Detail 413 C57BL/6  
polypeptide P62892 UniProt | EBI | MGI Sequence Detail 51 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    2 Sequences
  • PDB
    6SWA, 7CPU, 7LS1, 7LS2, 8P8N
  • InterPro Domains
    IPR000077 Large ribosomal subunit protein eL39
    IPR020083 Large ribosomal subunit protein eL39, conserved site
    IPR023626 Large ribosomal subunit protein eL39 domain superfamily
Molecular
Reagents
less
  • All nucleic 317
    cDNA 315
    Primer pair 2

    Microarray probesets 5
References
more
  • Summaries
    All 34
    Developmental Gene Expression 3
    Gene Ontology 7
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:333015 Li H, et al., A male germ-cell-specific ribosome controls male fertility. Nature. 2022 Dec;612(7941):725-731
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory