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Snapc2 Gene Detail
Summary
  • Symbol
    Snapc2
  • Name
    small nuclear RNA activating complex, polypeptide 2
  • Synonyms
    0610007H10Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914861
    NCBI Gene: 102209
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:4303102-4306220 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 1.99 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    119 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914861
 protein coding gene Chr8:4303080-4306220 (+)
129S1/SvImJ MGP_129S1SvImJ_G0033330
 protein coding gene Chr8:1238489-1241616 (+)
A/J MGP_AJ_G0033311
 protein coding gene Chr8:1187787-1190904 (+)
AKR/J MGP_AKRJ_G0033242
 protein coding gene Chr8:1222992-1226109 (+)
BALB/cJ MGP_BALBcJ_G0033311
 protein coding gene Chr8:1240871-1243992 (+)
C3H/HeJ MGP_C3HHeJ_G0033025
 protein coding gene Chr8:1232852-1235969 (+)
C57BL/6NJ MGP_C57BL6NJ_G0033823
 protein coding gene Chr8:1277735-1280852 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0030795
 protein coding gene Chr8:1062841-1065944 (+)
CAST/EiJ MGP_CASTEiJ_G0032349
 protein coding gene Chr8:1116648-1119768 (+)
CBA/J MGP_CBAJ_G0032998
 protein coding gene Chr8:1317015-1320132 (+)
DBA/2J MGP_DBA2J_G0033152
 protein coding gene Chr8:1148063-1151180 (+)
FVB/NJ MGP_FVBNJ_G0033099
 protein coding gene Chr8:1187381-1190498 (+)
LP/J MGP_LPJ_G0033246
 protein coding gene Chr8:1158625-1161742 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0033134
 protein coding gene Chr8:1292263-1295380 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0033840
 protein coding gene Chr8:1206619-1209740 (+)
PWK/PhJ MGP_PWKPhJ_G0032060
 protein coding gene Chr8:1112625-1115895 (+)
SPRET/EiJ MGP_SPRETEiJ_G0031903
 protein coding gene Chr8:1127903-1131031 (+)
WSB/EiJ MGP_WSBEiJ_G0032463
 protein coding gene Chr8:1186162-1189283 (+)



Homology
more
  • Human Ortholog
    SNAPC2, small nuclear RNA activating complex polypeptide 2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SNAPC2, small nuclear RNA activating complex polypeptide 2
  • Synonyms
    PTFDELTA, SNAP45
  • Links
    NCBI Gene ID: 6618
    neXtProt AC: NX_Q13487
    UniProt: Q13487

  • Chr Location
    19p13.2; chr19:7920338-7923250 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotypes from 1 allele in 1 genetic background
    1 images
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele show complete embryonic lethality before implantation with abnormal morula morphology, increased cell death, and failure of blastocyst formation.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
    9
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    755
  • Tissues
    39
  • cDNA Data
    61
  • Literature Summary
    3
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 102209 NCBI Gene Model | MGI Sequence Detail 3119 C57BL/6J ±  kb
transcript NM_133968 RefSeq | MGI Sequence Detail 1528 FVB/N  
polypeptide Q91XA5 UniProt | EBI | MGI Sequence Detail 359 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 62
    cDNA 61
    Primer pair 1

    Microarray probesets 4
Other
Accession IDs
less
MGI:2142678
References
more
  • Summaries
    All 35
    Developmental Gene Expression 3
    Gene Ontology 5
    Phenotypes 7
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory