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Rps13 Gene Detail
Summary
  • Symbol
    Rps13
  • Name
    ribosomal protein S13
  • Synonyms
    2700063M04Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915302
    NCBI Gene: 68052
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:115930742-115933425 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 61.61 cM, cytoband E1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    211 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915302
 protein coding gene Chr7:115930740-115933430 (-)
129S1/SvImJ MGP_129S1SvImJ_G0032890
 protein coding gene Chr7:120068652-120071875 (-)
A/J MGP_AJ_G0032873
 protein coding gene Chr7:117052639-117055328 (-)
AKR/J MGP_AKRJ_G0032805
 protein coding gene Chr7:120021986-120024674 (-)
BALB/cJ MGP_BALBcJ_G0032878
 protein coding gene Chr7:116774401-116777623 (-)
C3H/HeJ MGP_C3HHeJ_G0032588
 protein coding gene Chr7:119955654-119958548 (-)
C57BL/6NJ MGP_C57BL6NJ_G0033384
 protein coding gene Chr7:124879179-124881865 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0030356
 protein coding gene Chr7:118570327-118572928 (-)
CAST/EiJ MGP_CASTEiJ_G0031916
 protein coding gene Chr7:111643472-111645904 (-)
CBA/J MGP_CBAJ_G0032561
 protein coding gene Chr7:129020913-129023551 (-)
DBA/2J MGP_DBA2J_G0032713
 protein coding gene Chr7:115105893-115108582 (-)
FVB/NJ MGP_FVBNJ_G0032666
 protein coding gene Chr7:114956250-114958954 (-)
LP/J MGP_LPJ_G0032807
 protein coding gene Chr7:121553490-121557404 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0032698
 protein coding gene Chr7:130632837-130635525 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0033404
 protein coding gene Chr7:119013431-119016120 (-)
PWK/PhJ MGP_PWKPhJ_G0031624
 protein coding gene Chr7:107982130-107985255 (-)
SPRET/EiJ MGP_SPRETEiJ_G0031471
 protein coding gene Chr7:105746471-105749142 (-)
WSB/EiJ MGP_WSBEiJ_G0032029
 protein coding gene Chr7:119891317-119894003 (-)



Homology
more
  • Human Ortholog
    RPS13, ribosomal protein S13
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RPS13, ribosomal protein S13
  • Synonyms
    S13, uS15
  • Links
    NCBI Gene ID: 6207
    neXtProt AC: NX_P62277
    UniProt: P62277

  • Chr Location
    11p15.1; chr11:17074388-17077715 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    29
  • GO References
    8
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    9
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 68052 NCBI Gene Model | MGI Sequence Detail 2684 C57BL/6J ±  kb
transcript NM_026533 RefSeq | MGI Sequence Detail 585 C57BL/6  
polypeptide P62301 UniProt | EBI | MGI Sequence Detail 151 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    4 Sequences
  • Protein Ontology
    PR:000014254 eukaryotic-type small ribosomal subunit protein uS15
    (term hierarchy)
  • PDB
    7CPU, 7CPV, 7LS1, 7LS2
  • InterPro Domains
    IPR000589 Small ribosomal subunit protein uS15
    IPR023029 Small ribosomal subunit protein uS15, archaea/eukaryotes
    IPR012606 Small ribosomal subunit protein uS15, N-terminal
    IPR009068 uS15/NS1, RNA-binding domain superfamily
  • GlyGen
    P62301 1 site, 1 O-linked glycan (1 site)
Molecular
Reagents
less
  • All nucleic 10
    cDNA 10

    Microarray probesets 7
References
more
  • Summaries
    All 32
    Developmental Gene Expression 2
    Gene Ontology 8
    Phenotypes 6
  • Earliest
    J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
  • Latest
    J:333015 Li H, et al., A male germ-cell-specific ribosome controls male fertility. Nature. 2022 Dec;612(7941):725-731
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory