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Tspan11 Gene Detail
Summary
  • Symbol
    Tspan11
  • Name
    tetraspanin 11
  • Synonyms
    1110014F12Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915748
    NCBI Gene: 68498
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:127864585-127930940 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 62.56 cM, cytoband F3
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2208 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915748
 protein coding gene Chr6:127864552-127930940 (+)
129S1/SvImJ MGP_129S1SvImJ_G0031317
 protein coding gene Chr6:131433308-131503168 (+)
A/J MGP_AJ_G0031288
 protein coding gene Chr6:126414054-126481519 (+)
AKR/J MGP_AKRJ_G0031216
 protein coding gene Chr6:129824286-129895153 (+)
BALB/cJ MGP_BALBcJ_G0031295
 protein coding gene Chr6:125974982-126043124 (+)
C3H/HeJ MGP_C3HHeJ_G0031019
 protein coding gene Chr6:129965420-130033485 (+)
C57BL/6NJ MGP_C57BL6NJ_G0031752
 protein coding gene Chr6:134866603-134937356 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028900
 protein coding gene Chr6:123586494-123647930 (+)
CAST/EiJ MGP_CASTEiJ_G0030400
 protein coding gene Chr6:130203864-130277220 (+)
CBA/J MGP_CBAJ_G0030980
 protein coding gene Chr6:140043967-140122042 (+)
DBA/2J MGP_DBA2J_G0031136
 protein coding gene Chr6:125301234-125368975 (+)
FVB/NJ MGP_FVBNJ_G0031085
 protein coding gene Chr6:124230749-124298817 (+)
LP/J MGP_LPJ_G0031216
 protein coding gene Chr6:131529563-131605588 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0031124
 protein coding gene Chr6:143945395-144017725 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0031787
 protein coding gene Chr6:129806594-129876062 (+)
PWK/PhJ MGP_PWKPhJ_G0030115
 protein coding gene Chr6:123591038-123656796 (+)
SPRET/EiJ MGP_SPRETEiJ_G0029944
 protein coding gene Chr6:127905394-127975915 (+)
WSB/EiJ MGP_WSBEiJ_G0030485
 protein coding gene Chr6:130176987-130248536 (+)



Homology
more
  • Human Ortholog
    TSPAN11, tetraspanin 11
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TSPAN11, tetraspanin 11
  • Synonyms
    VSSW1971
  • Links
    NCBI Gene ID: 441631
    neXtProt AC: NX_A1L157
    UniProt: A1L157

  • Chr Location
    12p11.21; chr12:30926428-31016502 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    8 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    2
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    806
  • Tissues
    39
  • cDNA Data
    9
  • Literature Summary
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 68498 NCBI Gene Model | MGI Sequence Detail 66356 C57BL/6J ±  kb
    transcript NM_026743 RefSeq | MGI Sequence Detail 4209 C57BL/6  
    polypeptide Q9D1D1 UniProt | EBI | MGI Sequence Detail 253 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 9
      cDNA 9

      Microarray probesets 6
    Other
    Accession IDs
    less
    MGI:2141603
    References
    more
    • Summaries
      All 33
      Developmental Gene Expression 2
      Gene Ontology 2
      Phenotypes 8
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/05/2024
    MGI 6.24     		The Jackson Laboratory